Hb_010531_060

Information

Type -
Description -
Location Contig10531: 60582-60950
Sequence    

Annotation

kegg
ID sbi:SORBI_02g039045
description SORBIDRAFT_02g039045, Sb02g039045; hypothetical protein
nr
ID KJB67764.1
description hypothetical protein B456_010G209400, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2UG79
description Gossypium raimondii chromosome 10, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_010G209400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010531_060 0.0 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
2 Hb_023024_010 0.0457250295 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
3 Hb_005269_010 0.0541140184 - - -
4 Hb_002269_010 0.0852626339 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
5 Hb_001703_100 0.0919356719 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
6 Hb_123056_010 0.1254817208 - - -
7 Hb_082219_010 0.1280381303 - - Os03g0264300, partial [Oryza sativa Japonica Group]
8 Hb_007586_010 0.1690287471 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
9 Hb_000894_050 0.2214207291 - - -
10 Hb_096257_010 0.2221527136 - - -
11 Hb_180003_010 0.2311788168 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
12 Hb_030449_010 0.2322349315 - - -
13 Hb_021470_010 0.2384394213 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_004409_010 0.2424161212 - - -
15 Hb_141990_060 0.2447297166 - - -
16 Hb_003206_040 0.2456034791 - - Auxin efflux carrier component, putative [Ricinus communis]
17 Hb_001529_030 0.2518017001 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
18 Hb_003673_030 0.2815703573 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
19 Hb_009302_010 0.2853744728 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000188_030 0.2885266881 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010531_060 Hb_010531_060 Hb_023024_010 Hb_023024_010 Hb_010531_060--Hb_023024_010 Hb_005269_010 Hb_005269_010 Hb_010531_060--Hb_005269_010 Hb_002269_010 Hb_002269_010 Hb_010531_060--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_010531_060--Hb_001703_100 Hb_123056_010 Hb_123056_010 Hb_010531_060--Hb_123056_010 Hb_082219_010 Hb_082219_010 Hb_010531_060--Hb_082219_010 Hb_023024_010--Hb_082219_010 Hb_023024_010--Hb_005269_010 Hb_023024_010--Hb_002269_010 Hb_023024_010--Hb_001703_100 Hb_023024_010--Hb_123056_010 Hb_005269_010--Hb_002269_010 Hb_005269_010--Hb_001703_100 Hb_005269_010--Hb_123056_010 Hb_007586_010 Hb_007586_010 Hb_005269_010--Hb_007586_010 Hb_002269_010--Hb_001703_100 Hb_002269_010--Hb_123056_010 Hb_002269_010--Hb_007586_010 Hb_001703_100--Hb_123056_010 Hb_001703_100--Hb_007586_010 Hb_000894_050 Hb_000894_050 Hb_001703_100--Hb_000894_050 Hb_123056_010--Hb_007586_010 Hb_123056_010--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_123056_010--Hb_096257_010 Hb_082219_010--Hb_005269_010 Hb_082219_010--Hb_002269_010 Hb_082219_010--Hb_001703_100 Hb_001529_030 Hb_001529_030 Hb_082219_010--Hb_001529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.098284 0.261834 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis