Hb_010534_010

Information

Type -
Description -
Location Contig10534: 13004-17397
Sequence    

Annotation

kegg
ID pvu:PHAVU_008G128000g
description hypothetical protein
nr
ID XP_012085088.1
description PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
swissprot
ID Q8VWI1
description ER lumen protein-retaining receptor B OS=Arabidopsis thaliana GN=ERD2B PE=1 SV=1
trembl
ID A0A067K284
description ER lumen protein-retaining receptor OS=Jatropha curcas GN=JCGZ_17533 PE=3 SV=1
Gene Ontology
ID GO:0016021
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01817: 15004-17396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010534_010 0.0 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
2 Hb_000161_040 0.103762912 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
3 Hb_000086_170 0.1131321274 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
4 Hb_003097_070 0.1144471582 - - glucose regulated repressor protein, putative [Ricinus communis]
5 Hb_135831_010 0.1148051528 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
6 Hb_084247_010 0.1164021645 - - conserved hypothetical protein [Ricinus communis]
7 Hb_021419_030 0.1165874825 - - hypothetical protein glysoja_023295 [Glycine soja]
8 Hb_002631_280 0.1178942758 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
9 Hb_003057_060 0.1203661659 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005276_060 0.1210802863 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
11 Hb_000705_170 0.1224989745 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
12 Hb_000948_230 0.1226535068 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_003929_070 0.1228987723 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
14 Hb_000088_170 0.1232650473 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
15 Hb_014720_120 0.1247424658 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
16 Hb_000009_400 0.1249930371 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
17 Hb_000120_170 0.1274777084 - - selenoprotein [Populus trichocarpa]
18 Hb_013575_010 0.1285281707 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
19 Hb_000173_310 0.1289452879 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
20 Hb_003387_060 0.1299339621 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010534_010 Hb_010534_010 Hb_000161_040 Hb_000161_040 Hb_010534_010--Hb_000161_040 Hb_000086_170 Hb_000086_170 Hb_010534_010--Hb_000086_170 Hb_003097_070 Hb_003097_070 Hb_010534_010--Hb_003097_070 Hb_135831_010 Hb_135831_010 Hb_010534_010--Hb_135831_010 Hb_084247_010 Hb_084247_010 Hb_010534_010--Hb_084247_010 Hb_021419_030 Hb_021419_030 Hb_010534_010--Hb_021419_030 Hb_000161_040--Hb_003097_070 Hb_002728_080 Hb_002728_080 Hb_000161_040--Hb_002728_080 Hb_000116_450 Hb_000116_450 Hb_000161_040--Hb_000116_450 Hb_033286_010 Hb_033286_010 Hb_000161_040--Hb_033286_010 Hb_023313_030 Hb_023313_030 Hb_000161_040--Hb_023313_030 Hb_000258_070 Hb_000258_070 Hb_000161_040--Hb_000258_070 Hb_000270_310 Hb_000270_310 Hb_000086_170--Hb_000270_310 Hb_004312_010 Hb_004312_010 Hb_000086_170--Hb_004312_010 Hb_161574_020 Hb_161574_020 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050 Hb_003097_070--Hb_002728_080 Hb_012651_010 Hb_012651_010 Hb_003097_070--Hb_012651_010 Hb_000140_350 Hb_000140_350 Hb_003097_070--Hb_000140_350 Hb_003097_070--Hb_033286_010 Hb_000982_060 Hb_000982_060 Hb_135831_010--Hb_000982_060 Hb_000120_170 Hb_000120_170 Hb_135831_010--Hb_000120_170 Hb_003549_150 Hb_003549_150 Hb_135831_010--Hb_003549_150 Hb_002876_320 Hb_002876_320 Hb_135831_010--Hb_002876_320 Hb_007416_300 Hb_007416_300 Hb_135831_010--Hb_007416_300 Hb_000009_400 Hb_000009_400 Hb_135831_010--Hb_000009_400 Hb_012395_170 Hb_012395_170 Hb_084247_010--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_084247_010--Hb_005276_060 Hb_005162_090 Hb_005162_090 Hb_084247_010--Hb_005162_090 Hb_001124_010 Hb_001124_010 Hb_084247_010--Hb_001124_010 Hb_003929_070 Hb_003929_070 Hb_084247_010--Hb_003929_070 Hb_013575_010 Hb_013575_010 Hb_084247_010--Hb_013575_010 Hb_001408_140 Hb_001408_140 Hb_021419_030--Hb_001408_140 Hb_000915_180 Hb_000915_180 Hb_021419_030--Hb_000915_180 Hb_123915_040 Hb_123915_040 Hb_021419_030--Hb_123915_040 Hb_000905_110 Hb_000905_110 Hb_021419_030--Hb_000905_110 Hb_000340_530 Hb_000340_530 Hb_021419_030--Hb_000340_530 Hb_021419_030--Hb_000336_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72085 6.76724 7.56022 11.568 8.91922 3.17749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4668 7.07427 6.10579 2.93507 4.28869

CAGE analysis