Hb_010534_020

Information

Type -
Description -
Location Contig10534: 24208-27675
Sequence    

Annotation

kegg
ID rcu:RCOM_1719510
description hypothetical protein
nr
ID XP_012085089.1
description PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
swissprot
ID Q6NLW5
description Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
trembl
ID A0A067JQY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17534 PE=4 SV=1
Gene Ontology
ID GO:0006302
description protein xri1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01818: 24366-27646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010534_020 0.0 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
2 Hb_005271_140 0.1197580868 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
3 Hb_000392_250 0.1211565316 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
4 Hb_000300_100 0.1250923568 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
5 Hb_001232_090 0.1259297312 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
6 Hb_000757_130 0.1329251506 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029253_010 0.1392195119 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
8 Hb_124677_030 0.1399355063 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
9 Hb_000310_120 0.1413523809 - - PREDICTED: probable transaldolase [Jatropha curcas]
10 Hb_000922_320 0.141680501 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
11 Hb_001377_530 0.1459747266 - - NC domain-containing family protein [Populus trichocarpa]
12 Hb_003740_020 0.1502065534 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000940_210 0.1503550393 - - cyclophilin [Hevea brasiliensis]
14 Hb_003398_040 0.150835945 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
15 Hb_000589_170 0.1513922978 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
16 Hb_172706_020 0.1531784014 - - PREDICTED: protein ABIL2 [Jatropha curcas]
17 Hb_000000_480 0.1572754284 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
18 Hb_002627_020 0.1590257913 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
19 Hb_013405_070 0.159308483 - - ferric-chelate reductase, putative [Ricinus communis]
20 Hb_004679_040 0.1604899443 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010534_020 Hb_010534_020 Hb_005271_140 Hb_005271_140 Hb_010534_020--Hb_005271_140 Hb_000392_250 Hb_000392_250 Hb_010534_020--Hb_000392_250 Hb_000300_100 Hb_000300_100 Hb_010534_020--Hb_000300_100 Hb_001232_090 Hb_001232_090 Hb_010534_020--Hb_001232_090 Hb_000757_130 Hb_000757_130 Hb_010534_020--Hb_000757_130 Hb_029253_010 Hb_029253_010 Hb_010534_020--Hb_029253_010 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_005271_140--Hb_001232_090 Hb_000684_120 Hb_000684_120 Hb_005271_140--Hb_000684_120 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440 Hb_001754_050 Hb_001754_050 Hb_000392_250--Hb_001754_050 Hb_172706_020 Hb_172706_020 Hb_000392_250--Hb_172706_020 Hb_000622_330 Hb_000622_330 Hb_000392_250--Hb_000622_330 Hb_012053_020 Hb_012053_020 Hb_000392_250--Hb_012053_020 Hb_004218_130 Hb_004218_130 Hb_000392_250--Hb_004218_130 Hb_003398_040 Hb_003398_040 Hb_000300_100--Hb_003398_040 Hb_010381_040 Hb_010381_040 Hb_000300_100--Hb_010381_040 Hb_000310_060 Hb_000310_060 Hb_000300_100--Hb_000310_060 Hb_000310_120 Hb_000310_120 Hb_000300_100--Hb_000310_120 Hb_001587_040 Hb_001587_040 Hb_000300_100--Hb_001587_040 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000589_170 Hb_000589_170 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_029253_010--Hb_002374_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.791729 4.07873 17.2748 13.3103 1.2542 0.992922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92612 2.2468 0.907829 6.61545 5.85731

CAGE analysis