Hb_010543_010

Information

Type -
Description -
Location Contig10543: 21222-27351
Sequence    

Annotation

kegg
ID rcu:RCOM_0479420
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_002528657.1
description Phospholipid-transporting ATPase, putative [Ricinus communis]
swissprot
ID Q9SLK6
description Phospholipid-transporting ATPase 6 OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=2
trembl
ID B9SRN8
description Phospholipid-transporting ATPase OS=Ricinus communis GN=RCOM_0479420 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010543_010 0.0 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
2 Hb_001946_090 0.0010429625 - - -
3 Hb_000152_690 0.002751715 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
4 Hb_005065_090 0.0061085996 - - zinc/iron transporter, putative [Ricinus communis]
5 Hb_000760_090 0.0063498796 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
6 Hb_102933_010 0.0079222738 - - Pectate lyase precursor, putative [Ricinus communis]
7 Hb_001488_170 0.0098024389 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
8 Hb_001645_080 0.0118006327 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
9 Hb_005663_020 0.0123291318 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
10 Hb_003792_010 0.0134062162 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002254_020 0.0151545044 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
12 Hb_000053_140 0.0164052451 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001377_140 0.0176256115 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
14 Hb_004092_020 0.0259800673 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
15 Hb_002284_140 0.0263770753 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
16 Hb_003531_110 0.0266584389 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000140_010 0.0279973406 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_000556_210 0.0314744957 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
19 Hb_009225_030 0.0340482427 - - ring finger protein, putative [Ricinus communis]
20 Hb_002106_020 0.0340597744 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]

Gene co-expression network

sample Hb_010543_010 Hb_010543_010 Hb_001946_090 Hb_001946_090 Hb_010543_010--Hb_001946_090 Hb_000152_690 Hb_000152_690 Hb_010543_010--Hb_000152_690 Hb_005065_090 Hb_005065_090 Hb_010543_010--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_010543_010--Hb_000760_090 Hb_102933_010 Hb_102933_010 Hb_010543_010--Hb_102933_010 Hb_001488_170 Hb_001488_170 Hb_010543_010--Hb_001488_170 Hb_001946_090--Hb_000152_690 Hb_001946_090--Hb_005065_090 Hb_001946_090--Hb_000760_090 Hb_001946_090--Hb_001488_170 Hb_001946_090--Hb_102933_010 Hb_000152_690--Hb_102933_010 Hb_000152_690--Hb_005065_090 Hb_000152_690--Hb_000760_090 Hb_003792_010 Hb_003792_010 Hb_000152_690--Hb_003792_010 Hb_005065_090--Hb_000760_090 Hb_005065_090--Hb_001488_170 Hb_001645_080 Hb_001645_080 Hb_005065_090--Hb_001645_080 Hb_005663_020 Hb_005663_020 Hb_005065_090--Hb_005663_020 Hb_000760_090--Hb_001488_170 Hb_000760_090--Hb_001645_080 Hb_000760_090--Hb_005663_020 Hb_102933_010--Hb_003792_010 Hb_002254_020 Hb_002254_020 Hb_102933_010--Hb_002254_020 Hb_001377_140 Hb_001377_140 Hb_102933_010--Hb_001377_140 Hb_001488_170--Hb_001645_080 Hb_001488_170--Hb_005663_020 Hb_000053_140 Hb_000053_140 Hb_001488_170--Hb_000053_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0042191 0.00372647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis