Hb_010560_030

Information

Type -
Description -
Location Contig10560: 18001-20375
Sequence    

Annotation

kegg
ID rcu:RCOM_0902800
description Brain protein, putative
nr
ID XP_012091258.1
description PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
swissprot
ID O49636
description Mitochondrial pyruvate carrier 4 OS=Arabidopsis thaliana GN=MPC4 PE=3 SV=1
trembl
ID A0A067JD47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21149 PE=4 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial pyruvate carrier 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01859: 18027-20386
cDNA
(Sanger)
(ID:Location)		 010_I16r.ab1: 20584-21353 , 025_J23.ab1: 18029-20386 , 049_N24.ab1: 18027-20386

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010560_030 0.0 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
2 Hb_001053_140 0.0722552678 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
3 Hb_000327_380 0.0852354898 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
4 Hb_000189_240 0.0857369732 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
5 Hb_000302_140 0.0866080439 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
6 Hb_002303_060 0.0881718306 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000087_130 0.0903703477 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
8 Hb_001329_150 0.091760631 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
9 Hb_024074_010 0.0938838458 - - PREDICTED: cytochrome c [Jatropha curcas]
10 Hb_000571_020 0.095907765 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
11 Hb_002000_140 0.0973921843 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
12 Hb_011609_020 0.0975867988 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000356_090 0.0976807161 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
14 Hb_003605_160 0.0977079799 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
15 Hb_000085_350 0.1010040765 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
16 Hb_000030_200 0.1014586919 - - PREDICTED: early nodulin-93-like [Populus euphratica]
17 Hb_003880_030 0.1041010063 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
18 Hb_000009_290 0.1045296956 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
19 Hb_131181_010 0.1053961366 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
20 Hb_002304_160 0.1055545369 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010560_030 Hb_010560_030 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_001053_140--Hb_002303_060 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_001053_140--Hb_000189_240 Hb_005269_080 Hb_005269_080 Hb_001053_140--Hb_005269_080 Hb_000009_290 Hb_000009_290 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_002303_060--Hb_005269_080 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.4171 52.5332 110.172 156.832 34.1499 38.4904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
208.517 264.535 118.993 86.2 69.0119

CAGE analysis