Hb_010565_010

Information

Type -
Description -
Location Contig10565: 16588-27098
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03850g
description POPTRDRAFT_891844; hypothetical protein
nr
ID XP_011000714.1
description PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
swissprot
ID Q9HDW9
description Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi12 PE=3 SV=1
trembl
ID A0A067KPY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11233 PE=4 SV=1
Gene Ontology
ID GO:0000225
description n-acetylglucosaminyl-phosphatidylinositol de-n-acetylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01873: 15994-17990 , PASA_asmbl_01874: 16225-16445 , PASA_asmbl_01875: 18528-46271 , PASA_asmbl_01876: 24721-24890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010565_010 0.0 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
2 Hb_002067_120 0.0801836958 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
3 Hb_001386_140 0.0856855852 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_000606_080 0.1137387525 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
5 Hb_005023_030 0.1147575182 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
6 Hb_004934_070 0.1156805393 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
7 Hb_005714_130 0.1158724594 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
8 Hb_000679_150 0.1160114474 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
9 Hb_000991_070 0.1169451903 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
10 Hb_076875_020 0.1176877331 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_187739_020 0.1187438741 - - PREDICTED: B2 protein [Jatropha curcas]
12 Hb_000107_200 0.1213619632 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
13 Hb_041392_010 0.1222298726 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
14 Hb_003656_140 0.1226597965 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
15 Hb_007026_040 0.1254906458 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
16 Hb_115477_010 0.1291722548 - - Protein dom-3, putative [Ricinus communis]
17 Hb_126295_010 0.1293111487 - - PREDICTED: protein SEH1 [Jatropha curcas]
18 Hb_005608_030 0.1301165983 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
19 Hb_012023_020 0.1318520033 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
20 Hb_000696_350 0.1322107441 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_010565_010 Hb_010565_010 Hb_002067_120 Hb_002067_120 Hb_010565_010--Hb_002067_120 Hb_001386_140 Hb_001386_140 Hb_010565_010--Hb_001386_140 Hb_000606_080 Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_005023_030 Hb_005023_030 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_000107_200 Hb_000107_200 Hb_002067_120--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_002067_120--Hb_000606_080 Hb_001386_140--Hb_005023_030 Hb_006663_090 Hb_006663_090 Hb_001386_140--Hb_006663_090 Hb_001386_140--Hb_002067_120 Hb_115477_010 Hb_115477_010 Hb_001386_140--Hb_115477_010 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_003502_080 Hb_003502_080 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_000606_080--Hb_006951_020 Hb_005023_030--Hb_000107_200 Hb_001135_140 Hb_001135_140 Hb_005023_030--Hb_001135_140 Hb_005023_030--Hb_002067_120 Hb_026228_020 Hb_026228_020 Hb_005023_030--Hb_026228_020 Hb_005862_010 Hb_005862_010 Hb_004934_070--Hb_005862_010 Hb_000785_080 Hb_000785_080 Hb_004934_070--Hb_000785_080 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004881_020 Hb_004881_020 Hb_004934_070--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_004934_070--Hb_144598_030 Hb_002007_180 Hb_002007_180 Hb_005714_130--Hb_002007_180 Hb_001767_120 Hb_001767_120 Hb_005714_130--Hb_001767_120 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_005714_130--Hb_128998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1476 6.82706 3.8009 15.0048 9.01585 31.2281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.81587 7.59737 6.53415 6.48496 4.28792

CAGE analysis