Hb_010565_020

Information

Type -
Description -
Location Contig10565: 35014-35508
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01875: 18528-46271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010565_020 0.0 - - -
2 Hb_010447_020 0.2329548266 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
3 Hb_164458_010 0.2739175978 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_006810_070 0.2741471267 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_033926_010 0.2795854184 - - -
6 Hb_003238_030 0.2799609826 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
7 Hb_000123_250 0.2858872492 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
8 Hb_007223_010 0.286295156 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000905_150 0.288424692 - - Cytochrome P450 [Theobroma cacao]
10 Hb_153161_010 0.2995606543 - - phospholipid-transporting atpase, putative [Ricinus communis]
11 Hb_003096_040 0.3019957049 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
12 Hb_006269_040 0.3027141362 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_003311_050 0.3038735633 - - PREDICTED: two-pore potassium channel 1-like [Jatropha curcas]
14 Hb_010315_070 0.3046671457 - - -
15 Hb_007481_030 0.3047556589 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
16 Hb_004976_060 0.3049081134 - - -
17 Hb_000181_440 0.3059200872 - - -
18 Hb_010261_010 0.3095707859 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
19 Hb_116125_010 0.3113481607 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
20 Hb_012395_080 0.3125360189 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]

Gene co-expression network

sample Hb_010565_020 Hb_010565_020 Hb_010447_020 Hb_010447_020 Hb_010565_020--Hb_010447_020 Hb_164458_010 Hb_164458_010 Hb_010565_020--Hb_164458_010 Hb_006810_070 Hb_006810_070 Hb_010565_020--Hb_006810_070 Hb_033926_010 Hb_033926_010 Hb_010565_020--Hb_033926_010 Hb_003238_030 Hb_003238_030 Hb_010565_020--Hb_003238_030 Hb_000123_250 Hb_000123_250 Hb_010565_020--Hb_000123_250 Hb_010447_020--Hb_033926_010 Hb_003772_020 Hb_003772_020 Hb_010447_020--Hb_003772_020 Hb_012107_070 Hb_012107_070 Hb_010447_020--Hb_012107_070 Hb_006230_040 Hb_006230_040 Hb_010447_020--Hb_006230_040 Hb_055339_010 Hb_055339_010 Hb_010447_020--Hb_055339_010 Hb_003025_050 Hb_003025_050 Hb_164458_010--Hb_003025_050 Hb_005839_140 Hb_005839_140 Hb_164458_010--Hb_005839_140 Hb_143960_010 Hb_143960_010 Hb_164458_010--Hb_143960_010 Hb_002997_160 Hb_002997_160 Hb_164458_010--Hb_002997_160 Hb_005260_040 Hb_005260_040 Hb_164458_010--Hb_005260_040 Hb_003780_090 Hb_003780_090 Hb_164458_010--Hb_003780_090 Hb_007101_220 Hb_007101_220 Hb_006810_070--Hb_007101_220 Hb_006810_070--Hb_000123_250 Hb_006810_070--Hb_003238_030 Hb_030827_050 Hb_030827_050 Hb_006810_070--Hb_030827_050 Hb_006083_060 Hb_006083_060 Hb_006810_070--Hb_006083_060 Hb_000181_440 Hb_000181_440 Hb_033926_010--Hb_000181_440 Hb_005203_050 Hb_005203_050 Hb_033926_010--Hb_005203_050 Hb_007223_010 Hb_007223_010 Hb_033926_010--Hb_007223_010 Hb_009189_030 Hb_009189_030 Hb_033926_010--Hb_009189_030 Hb_009372_010 Hb_009372_010 Hb_033926_010--Hb_009372_010 Hb_082945_020 Hb_082945_020 Hb_033926_010--Hb_082945_020 Hb_000380_200 Hb_000380_200 Hb_003238_030--Hb_000380_200 Hb_000295_010 Hb_000295_010 Hb_003238_030--Hb_000295_010 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_001414_130 Hb_001414_130 Hb_000123_250--Hb_001414_130 Hb_003311_050 Hb_003311_050 Hb_000123_250--Hb_003311_050 Hb_000123_250--Hb_003238_030 Hb_000197_050 Hb_000197_050 Hb_000123_250--Hb_000197_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21662 0.655956 0.408153 0 0.633485 0.448799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.410532 0

CAGE analysis