Hb_010565_030

Information

Type -
Description -
Location Contig10565: 36057-44171
Sequence    

Annotation

kegg
ID vvi:104879534
description uncharacterized LOC104879534
nr
ID CAN74964.1
description hypothetical protein VITISV_006810 [Vitis vinifera]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5BSK6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006810 PE=4 SV=1
Gene Ontology
ID GO:0003676
description af478379_1gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01875: 18528-46271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010565_030 0.0 - - hypothetical protein VITISV_006810 [Vitis vinifera]
2 Hb_005542_010 0.0706165255 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
3 Hb_011472_050 0.0761710496 - - -
4 Hb_000173_110 0.1019773492 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
5 Hb_011609_210 0.1052953372 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
6 Hb_000123_340 0.1253222308 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
7 Hb_002110_110 0.12930406 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
8 Hb_000820_100 0.1310814711 - - RNA-directed DNA polymerase [Arachis hypogaea]
9 Hb_001366_260 0.1313355073 - - T4.15 [Malus x robusta]
10 Hb_067472_010 0.1405297037 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
11 Hb_009434_060 0.1411963729 - - T4.15 [Malus x robusta]
12 Hb_003913_040 0.1429433467 - - ferric reductase oxidase [Manihot esculenta]
13 Hb_116784_020 0.1466036827 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_001405_230 0.1471011035 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
15 Hb_001514_150 0.1480108378 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
16 Hb_065525_070 0.1482126342 - - unnamed protein product [Homo sapiens]
17 Hb_003786_010 0.1492384375 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
18 Hb_006940_020 0.1497178366 - - polyprotein [Oryza australiensis]
19 Hb_004242_120 0.1542381638 - - Organic cation transporter, putative [Ricinus communis]
20 Hb_007543_020 0.155725856 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_010565_030 Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_010565_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_010565_030--Hb_011472_050 Hb_000173_110 Hb_000173_110 Hb_010565_030--Hb_000173_110 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_005542_010--Hb_011472_050 Hb_005542_010--Hb_002110_110 Hb_005542_010--Hb_011609_210 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_011472_050--Hb_009434_060 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000173_110--Hb_000820_100 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_012404_080 Hb_012404_080 Hb_011609_210--Hb_012404_080 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_000454_160 Hb_000454_160 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_001385_070 Hb_001385_070 Hb_000123_340--Hb_001385_070 Hb_000123_340--Hb_000820_100 Hb_127552_050 Hb_127552_050 Hb_000123_340--Hb_127552_050 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_002110_110--Hb_011472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202452 2.71801 1.35028 0.908214 0.19243 0.260088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104674 0.232153 0.15844 1.52383 6.83119

CAGE analysis