Hb_010565_040

Information

Type -
Description -
Location Contig10565: 45099-46511
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05280g
description hypothetical protein
nr
ID XP_006374234.1
description hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID K4BXP5
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g010730.1 PE=4 SV=1
Gene Ontology
ID GO:0000225
description n-acetylglucosaminyl-phosphatidylinositol de-n-acetylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01875: 18528-46271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010565_040 0.0 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
2 Hb_177103_010 0.1525602714 - - PREDICTED: histone H2AX [Elaeis guineensis]
3 Hb_006198_090 0.1602653348 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
4 Hb_005085_030 0.1613369414 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
5 Hb_001998_140 0.1626938384 - - -
6 Hb_005679_070 0.1645952446 - - hypothetical protein M569_07741, partial [Genlisea aurea]
7 Hb_116632_010 0.1757770874 - - unnamed protein product [Vitis vinifera]
8 Hb_168737_010 0.1786147018 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000810_020 0.1820280381 - - -
10 Hb_166480_010 0.1866573796 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
11 Hb_002482_060 0.1918156987 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
12 Hb_007188_030 0.1927228014 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
13 Hb_003656_150 0.1937376468 - - -
14 Hb_003029_100 0.1993263443 - - -
15 Hb_002784_070 0.2002235839 - - BnaUnng01470D [Brassica napus]
16 Hb_000120_190 0.2013125723 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
17 Hb_007763_050 0.2027999252 - - hypothetical protein L484_012752 [Morus notabilis]
18 Hb_068014_010 0.2036301763 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
19 Hb_002815_050 0.20398353 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
20 Hb_003688_110 0.2061304565 - - -

Gene co-expression network

sample Hb_010565_040 Hb_010565_040 Hb_177103_010 Hb_177103_010 Hb_010565_040--Hb_177103_010 Hb_006198_090 Hb_006198_090 Hb_010565_040--Hb_006198_090 Hb_005085_030 Hb_005085_030 Hb_010565_040--Hb_005085_030 Hb_001998_140 Hb_001998_140 Hb_010565_040--Hb_001998_140 Hb_005679_070 Hb_005679_070 Hb_010565_040--Hb_005679_070 Hb_116632_010 Hb_116632_010 Hb_010565_040--Hb_116632_010 Hb_169170_010 Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_007188_030 Hb_007188_030 Hb_177103_010--Hb_007188_030 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010 Hb_006198_090--Hb_003656_150 Hb_006198_090--Hb_001998_140 Hb_006198_090--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_006198_090--Hb_002482_060 Hb_006198_090--Hb_169170_010 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_152554_010 Hb_152554_010 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010 Hb_001998_140--Hb_005679_070 Hb_001998_140--Hb_007188_030 Hb_001998_140--Hb_002482_060 Hb_026228_010 Hb_026228_010 Hb_001998_140--Hb_026228_010 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_005679_070--Hb_068014_010 Hb_005679_070--Hb_006663_090 Hb_116632_010--Hb_007188_020 Hb_116632_010--Hb_068014_010 Hb_003581_010 Hb_003581_010 Hb_116632_010--Hb_003581_010 Hb_116632_010--Hb_005085_030 Hb_000265_130 Hb_000265_130 Hb_116632_010--Hb_000265_130 Hb_017462_010 Hb_017462_010 Hb_116632_010--Hb_017462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56602 1.25539 1.21524 16.2438 0 47.6725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9558 8.79195 3.68961 7.50632 4.84519

CAGE analysis