Hb_010578_020

Information

Type -
Description -
Location Contig10578: 31321-31918
Sequence    

Annotation

kegg
ID rcu:RCOM_0484640
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002531295.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZ76
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0484640 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at3g18970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_052764_120 0.0692335748 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
3 Hb_004724_250 0.0740626401 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_002435_010 0.099249595 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
5 Hb_048141_060 0.0996437522 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
6 Hb_002267_010 0.1003166493 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
7 Hb_000164_030 0.1157594357 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
8 Hb_003207_220 0.1237372045 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
9 Hb_000069_250 0.1324087104 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
10 Hb_002534_040 0.1363177358 - - Calmodulin, putative [Ricinus communis]
11 Hb_002613_030 0.1442878139 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
12 Hb_064971_010 0.1455552085 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_002999_150 0.1489312403 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_000668_190 0.1496804139 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
15 Hb_071654_010 0.152853943 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
16 Hb_000280_100 0.1556074289 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
17 Hb_002447_060 0.1641135358 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
18 Hb_012633_010 0.1651875292 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
19 Hb_136620_010 0.1659183882 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
20 Hb_003762_010 0.1677138768 - - -

Gene co-expression network

sample Hb_010578_020 Hb_010578_020 Hb_052764_120 Hb_052764_120 Hb_010578_020--Hb_052764_120 Hb_004724_250 Hb_004724_250 Hb_010578_020--Hb_004724_250 Hb_002435_010 Hb_002435_010 Hb_010578_020--Hb_002435_010 Hb_048141_060 Hb_048141_060 Hb_010578_020--Hb_048141_060 Hb_002267_010 Hb_002267_010 Hb_010578_020--Hb_002267_010 Hb_000164_030 Hb_000164_030 Hb_010578_020--Hb_000164_030 Hb_052764_120--Hb_002267_010 Hb_052764_120--Hb_002435_010 Hb_003207_220 Hb_003207_220 Hb_052764_120--Hb_003207_220 Hb_002999_150 Hb_002999_150 Hb_052764_120--Hb_002999_150 Hb_052764_120--Hb_048141_060 Hb_004724_250--Hb_000164_030 Hb_004724_250--Hb_048141_060 Hb_064971_010 Hb_064971_010 Hb_004724_250--Hb_064971_010 Hb_004724_250--Hb_002267_010 Hb_004724_250--Hb_052764_120 Hb_002435_010--Hb_002267_010 Hb_002435_010--Hb_003207_220 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190 Hb_048141_060--Hb_000164_030 Hb_048141_060--Hb_002267_010 Hb_071654_010 Hb_071654_010 Hb_048141_060--Hb_071654_010 Hb_005649_070 Hb_005649_070 Hb_048141_060--Hb_005649_070 Hb_002267_010--Hb_071654_010 Hb_002267_010--Hb_000164_030 Hb_002267_010--Hb_002999_150 Hb_000164_030--Hb_064971_010 Hb_000164_030--Hb_005649_070 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.402493 2.79581 0.195186 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis