Hb_010578_080

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig10578: 79916-82187
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03870g
description POPTRDRAFT_814326; hypothetical protein
nr
ID XP_011038568.1
description PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
swissprot
ID P13089
description Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1
trembl
ID B9I5F9
description Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0013s03870g PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01906: 80066-82398
cDNA
(Sanger)
(ID:Location)		 010_G14.ab1: 80078-81626 , 010_L11.ab1: 80201-81385 , 012_I16.ab1: 80066-81729 , 012_P17.ab1: 80078-81650 , 014_B21.ab1: 80095-81699 , 017_K05.ab1: 80097-81385 , 023_C02.ab1: 80237-81668 , 044_L17.ab1: 80055-81710 , 047_D10.ab1: 80066-81696 , 048_P23.ab1: 80066-81697 , 052_K09.ab1: 80068-81703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_080 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
2 Hb_062226_130 0.070126765 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
3 Hb_009296_070 0.0725025814 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
4 Hb_004712_210 0.0734089384 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
5 Hb_000392_420 0.0771972112 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
6 Hb_002534_100 0.0786630124 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
7 Hb_000365_230 0.0788474892 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
8 Hb_000140_090 0.0790862194 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
9 Hb_002007_080 0.0792271486 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
10 Hb_000774_020 0.0792402775 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
11 Hb_022250_060 0.0817918573 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
12 Hb_003861_060 0.0830863682 - - PREDICTED: treacle protein [Jatropha curcas]
13 Hb_003304_020 0.0877134554 - - Polyadenylate-binding protein RBP47C [Glycine soja]
14 Hb_003428_010 0.0877557661 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
15 Hb_000778_010 0.0883124317 - - hypothetical protein [Bacillus subtilis]
16 Hb_164390_010 0.0889591262 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
17 Hb_000484_130 0.0894576563 - - splicing factor, putative [Ricinus communis]
18 Hb_004429_020 0.0907518972 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
19 Hb_001025_120 0.0914253843 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
20 Hb_007317_010 0.0914515437 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010578_080 Hb_010578_080 Hb_062226_130 Hb_062226_130 Hb_010578_080--Hb_062226_130 Hb_009296_070 Hb_009296_070 Hb_010578_080--Hb_009296_070 Hb_004712_210 Hb_004712_210 Hb_010578_080--Hb_004712_210 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_002534_100 Hb_002534_100 Hb_010578_080--Hb_002534_100 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230 Hb_000738_020 Hb_000738_020 Hb_062226_130--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_062226_130--Hb_005162_090 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010 Hb_005588_080 Hb_005588_080 Hb_009296_070--Hb_005588_080 Hb_003861_060 Hb_003861_060 Hb_009296_070--Hb_003861_060 Hb_009296_070--Hb_062226_130 Hb_003878_090 Hb_003878_090 Hb_009296_070--Hb_003878_090 Hb_009296_070--Hb_000365_230 Hb_004712_210--Hb_002534_100 Hb_002303_020 Hb_002303_020 Hb_004712_210--Hb_002303_020 Hb_044653_040 Hb_044653_040 Hb_004712_210--Hb_044653_040 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_164390_010 Hb_164390_010 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040 Hb_002534_100--Hb_002303_020 Hb_002534_100--Hb_044653_040 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_002534_100--Hb_062226_130 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_000365_230--Hb_000778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.1298 75.1398 110.285 81.7758 39.591 46.4398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.0846 104.314 95.6437 84.5608 77.5188

CAGE analysis