Hb_010578_090

Information

Type -
Description -
Location Contig10578: 84276-85637
Sequence    

Annotation

kegg
ID sot:102581743
description WIN2; wound-induced protein WIN2-like
nr
ID AAO63573.1
description HEV2.1 [Hevea brasiliensis]
swissprot
ID P02877
description Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2
trembl
ID Q6JYQ8
description HEV2.1 OS=Hevea brasiliensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01907: 84254-84680
cDNA
(Sanger)
(ID:Location)		 032_M18.ab1: 84295-84593

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010578_090 0.0 - - HEV2.1 [Hevea brasiliensis]
2 Hb_029879_080 0.069214218 - - unknown [Populus trichocarpa]
3 Hb_005016_130 0.0760816751 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_002298_040 0.083641366 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
5 Hb_115919_020 0.0979346387 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
6 Hb_000284_010 0.1009899227 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_048141_010 0.1053563702 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
8 Hb_008847_010 0.111525129 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_002221_080 0.1115920102 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
10 Hb_000787_070 0.112345482 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
11 Hb_000078_030 0.1197356472 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000130_390 0.1210332194 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
13 Hb_000206_220 0.1227022713 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
14 Hb_002518_250 0.1228388971 - - conserved hypothetical protein 10 [Hevea brasiliensis]
15 Hb_003540_230 0.1268417408 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
16 Hb_000193_230 0.1321013327 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
17 Hb_000753_260 0.1323093962 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
18 Hb_001248_020 0.1355560203 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
19 Hb_003018_180 0.1361936046 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
20 Hb_007317_220 0.1366534402 - - hypothetical protein JCGZ_12701 [Jatropha curcas]

Gene co-expression network

sample Hb_010578_090 Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_010578_090--Hb_029879_080 Hb_005016_130 Hb_005016_130 Hb_010578_090--Hb_005016_130 Hb_002298_040 Hb_002298_040 Hb_010578_090--Hb_002298_040 Hb_115919_020 Hb_115919_020 Hb_010578_090--Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_010578_090--Hb_000284_010 Hb_048141_010 Hb_048141_010 Hb_010578_090--Hb_048141_010 Hb_029879_080--Hb_002298_040 Hb_029879_080--Hb_005016_130 Hb_029879_080--Hb_115919_020 Hb_029879_080--Hb_000284_010 Hb_002221_080 Hb_002221_080 Hb_029879_080--Hb_002221_080 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_000078_030 Hb_000078_030 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_000284_010 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_002298_040--Hb_000078_030 Hb_002298_040--Hb_005016_130 Hb_002298_040--Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_115919_020--Hb_000078_030 Hb_115919_020--Hb_000787_070 Hb_115919_020--Hb_000193_230 Hb_115919_020--Hb_002298_040 Hb_000284_010--Hb_000078_030 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_000193_230 Hb_008847_010 Hb_008847_010 Hb_048141_010--Hb_008847_010 Hb_003540_230 Hb_003540_230 Hb_048141_010--Hb_003540_230 Hb_004787_090 Hb_004787_090 Hb_048141_010--Hb_004787_090 Hb_048141_010--Hb_005016_130 Hb_001631_080 Hb_001631_080 Hb_048141_010--Hb_001631_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
238.033 2.31532 0.696439 11.8562 175.487 204.89
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
405.338 176.309 132.395 29.2548 1.35279

CAGE analysis