Hb_010584_010

Information

Type -
Description -
Location Contig10584: 27187-27930
Sequence    

Annotation

kegg
ID rcu:RCOM_1691800
description hypothetical protein
nr
ID XP_012086740.1
description PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01914: 27066-28230
cDNA
(Sanger)
(ID:Location)		 006_H05.ab1: 27122-27975 , 010_L06.ab1: 27066-27807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010584_010 0.0 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
2 Hb_057451_010 0.0950441637 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
3 Hb_009028_030 0.0977854231 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
4 Hb_003710_040 0.0988743516 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_007257_050 0.1016218403 - - protein with unknown function [Ricinus communis]
6 Hb_002609_010 0.1072605357 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
7 Hb_000640_200 0.1092804163 - - hypothetical protein RCOM_1346600 [Ricinus communis]
8 Hb_000265_250 0.109698259 - - auxilin, putative [Ricinus communis]
9 Hb_003349_010 0.1113981155 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
10 Hb_006501_020 0.1150286183 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
11 Hb_003157_010 0.1154109982 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_002002_030 0.120499765 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_002849_080 0.124608333 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
14 Hb_000886_060 0.1257591094 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
15 Hb_004899_070 0.129400956 - - PREDICTED: RRP12-like protein [Jatropha curcas]
16 Hb_148209_020 0.1298290386 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
17 Hb_031069_020 0.1309068748 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
18 Hb_000261_290 0.1310219317 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
19 Hb_027420_050 0.1317188489 - - -
20 Hb_011465_030 0.134070921 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_010584_010 Hb_010584_010 Hb_057451_010 Hb_057451_010 Hb_010584_010--Hb_057451_010 Hb_009028_030 Hb_009028_030 Hb_010584_010--Hb_009028_030 Hb_003710_040 Hb_003710_040 Hb_010584_010--Hb_003710_040 Hb_007257_050 Hb_007257_050 Hb_010584_010--Hb_007257_050 Hb_002609_010 Hb_002609_010 Hb_010584_010--Hb_002609_010 Hb_000640_200 Hb_000640_200 Hb_010584_010--Hb_000640_200 Hb_057451_010--Hb_009028_030 Hb_057451_010--Hb_000640_200 Hb_003157_010 Hb_003157_010 Hb_057451_010--Hb_003157_010 Hb_057451_010--Hb_003710_040 Hb_004899_070 Hb_004899_070 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_009028_030--Hb_003157_010 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_001221_160 Hb_001221_160 Hb_003710_040--Hb_001221_160 Hb_003710_040--Hb_004899_070 Hb_003710_040--Hb_000640_200 Hb_000261_290 Hb_000261_290 Hb_003710_040--Hb_000261_290 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_007257_050--Hb_009028_030 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_007257_050--Hb_003157_010 Hb_002849_080 Hb_002849_080 Hb_002609_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002609_010--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002609_010--Hb_006316_070 Hb_000413_170 Hb_000413_170 Hb_002609_010--Hb_000413_170 Hb_001247_230 Hb_001247_230 Hb_002609_010--Hb_001247_230 Hb_002609_010--Hb_000265_250 Hb_000640_200--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_006588_050 Hb_006588_050 Hb_000640_200--Hb_006588_050 Hb_000813_100 Hb_000813_100 Hb_000640_200--Hb_000813_100 Hb_031069_020 Hb_031069_020 Hb_000640_200--Hb_031069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
500.017 622.056 66.5321 203.347 682.355 611.328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.612 59.0765 101.068 167.974 66.0648

CAGE analysis