Hb_010589_040

Information

Type -
Description -
Location Contig10589: 20594-23844
Sequence    

Annotation

kegg
ID rcu:RCOM_0810690
description hypothetical protein
nr
ID XP_002518649.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RY65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0810690 PE=4 SV=1
Gene Ontology
ID GO:0016740
description soluble secretory phospholipase a2 receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01923: 20706-23912 , PASA_asmbl_01924: 23051-23308
cDNA
(Sanger)
(ID:Location)		 006_N01.ab1: 22386-23912

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001946_320 0.0823366996 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
3 Hb_000861_040 0.0848653789 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
4 Hb_015934_020 0.1039622154 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
5 Hb_012522_030 0.1053375888 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_002307_090 0.1076839365 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
7 Hb_002291_030 0.1083089054 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
8 Hb_002282_020 0.1113870268 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
9 Hb_002387_060 0.1128024137 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001232_130 0.1134873253 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
11 Hb_007047_010 0.1145575061 - - PREDICTED: expansin-A13 [Jatropha curcas]
12 Hb_002326_030 0.1151551566 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
13 Hb_001677_110 0.1158313701 - - Protein YIPF1, putative [Ricinus communis]
14 Hb_002539_080 0.1160548125 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
15 Hb_009265_060 0.1166395237 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
16 Hb_003408_030 0.1189927666 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_026988_020 0.1192526699 - - outward rectifying K+ channel [Hevea brasiliensis]
18 Hb_005463_020 0.121238977 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
19 Hb_002352_010 0.1221393747 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
20 Hb_002527_070 0.1227584489 - - axonemal dynein light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_010589_040 Hb_010589_040 Hb_001946_320 Hb_001946_320 Hb_010589_040--Hb_001946_320 Hb_000861_040 Hb_000861_040 Hb_010589_040--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_010589_040--Hb_015934_020 Hb_012522_030 Hb_012522_030 Hb_010589_040--Hb_012522_030 Hb_002307_090 Hb_002307_090 Hb_010589_040--Hb_002307_090 Hb_002291_030 Hb_002291_030 Hb_010589_040--Hb_002291_030 Hb_001946_320--Hb_002307_090 Hb_001232_130 Hb_001232_130 Hb_001946_320--Hb_001232_130 Hb_001946_320--Hb_000861_040 Hb_001946_320--Hb_015934_020 Hb_007229_060 Hb_007229_060 Hb_001946_320--Hb_007229_060 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_012522_030--Hb_002387_060 Hb_012522_030--Hb_002326_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_002307_090--Hb_001232_130 Hb_002307_090--Hb_007229_060 Hb_002307_090--Hb_000861_040 Hb_002307_090--Hb_005000_290 Hb_002307_090--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0354 1.40138 6.25335 13.2761 38.7851 41.8281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.495 84.0068 124.321 13.7323 6.47965

CAGE analysis