Hb_010589_050

Information

Type -
Description -
Location Contig10589: 26720-27825
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01925: 26645-27269
cDNA
(Sanger)
(ID:Location)		 046_E16.ab1: 27308-27825

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_050 0.0 - - -
2 Hb_000352_180 0.1028781676 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012586_020 0.1128228344 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
4 Hb_039946_010 0.1153139293 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
5 Hb_058143_010 0.1305827095 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
6 Hb_004942_020 0.1446711622 - - Potassium transporter, putative [Ricinus communis]
7 Hb_000352_160 0.1476720503 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004968_070 0.1626985211 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001348_230 0.1656033443 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
10 Hb_002478_020 0.172060467 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
11 Hb_002588_040 0.1720726128 - - Pathogenesis-related protein 1 [Theobroma cacao]
12 Hb_001143_070 0.1801101058 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
13 Hb_001369_210 0.1841552389 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
14 Hb_000316_100 0.1903581564 - - protein with unknown function [Ricinus communis]
15 Hb_001396_090 0.1909882248 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
16 Hb_061383_010 0.1931969837 - - beta-1,3-glucanase [Hevea brasiliensis]
17 Hb_000033_040 0.1952934874 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002989_040 0.1968116499 - - hypothetical protein 1 [Hevea brasiliensis]
19 Hb_089100_050 0.1975931003 - - -
20 Hb_002290_050 0.1998037538 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010589_050 Hb_010589_050 Hb_000352_180 Hb_000352_180 Hb_010589_050--Hb_000352_180 Hb_012586_020 Hb_012586_020 Hb_010589_050--Hb_012586_020 Hb_039946_010 Hb_039946_010 Hb_010589_050--Hb_039946_010 Hb_058143_010 Hb_058143_010 Hb_010589_050--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160 Hb_000352_180--Hb_058143_010 Hb_000352_180--Hb_004942_020 Hb_000352_180--Hb_012586_020 Hb_000352_180--Hb_039946_010 Hb_113906_010 Hb_113906_010 Hb_000352_180--Hb_113906_010 Hb_012586_020--Hb_004942_020 Hb_012586_020--Hb_039946_010 Hb_012586_020--Hb_058143_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_039946_010--Hb_058143_010 Hb_039946_010--Hb_004942_020 Hb_002478_020 Hb_002478_020 Hb_039946_010--Hb_002478_020 Hb_058143_010--Hb_004942_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_004942_020--Hb_113906_010 Hb_004942_020--Hb_002478_020 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_001369_210 Hb_001369_210 Hb_000352_160--Hb_001369_210 Hb_001348_230 Hb_001348_230 Hb_000352_160--Hb_001348_230 Hb_002588_040 Hb_002588_040 Hb_000352_160--Hb_002588_040 Hb_001146_060 Hb_001146_060 Hb_000352_160--Hb_001146_060 Hb_001767_050 Hb_001767_050 Hb_000352_160--Hb_001767_050 Hb_000352_160--Hb_001143_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3942 0.0531897 0 0 6.68337 3.97188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.8218 233.118 81.648 13.8372 0.179322

CAGE analysis