Hb_010589_110

Information

Type -
Description -
Location Contig10589: 80170-83417
Sequence    

Annotation

kegg
ID rcu:RCOM_0810340
description Pumilio domain-containing protein C6G9.14, putative
nr
ID XP_012093203.1
description PREDICTED: pumilio homolog 12-like [Jatropha curcas]
swissprot
ID Q9LVC3
description Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
trembl
ID A0A067L7Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16285 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_110 0.0 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
2 Hb_030370_030 0.1841139332 - - putative wall-associated kinase family protein [Populus trichocarpa]
3 Hb_000029_270 0.2064305094 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
4 Hb_000077_410 0.2089721031 - - protein with unknown function [Ricinus communis]
5 Hb_000699_120 0.2459600022 - - DNA-binding family protein [Populus trichocarpa]
6 Hb_002260_090 0.2560843869 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
7 Hb_001892_120 0.2562051457 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
8 Hb_010098_070 0.256807055 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003052_040 0.2590678298 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001279_130 0.2645135714 - - hypothetical protein L484_017676 [Morus notabilis]
11 Hb_005908_040 0.2674688451 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
12 Hb_000107_650 0.2682869212 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
13 Hb_000544_110 0.2703362306 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
14 Hb_078633_010 0.2732725636 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_003073_140 0.2739110224 - - F-box family protein [Theobroma cacao]
16 Hb_002235_220 0.2753471785 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
17 Hb_004048_060 0.2755414792 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
18 Hb_002820_140 0.2757831483 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
19 Hb_003335_070 0.279234249 - - -
20 Hb_001396_190 0.2799934125 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]

Gene co-expression network

sample Hb_010589_110 Hb_010589_110 Hb_030370_030 Hb_030370_030 Hb_010589_110--Hb_030370_030 Hb_000029_270 Hb_000029_270 Hb_010589_110--Hb_000029_270 Hb_000077_410 Hb_000077_410 Hb_010589_110--Hb_000077_410 Hb_000699_120 Hb_000699_120 Hb_010589_110--Hb_000699_120 Hb_002260_090 Hb_002260_090 Hb_010589_110--Hb_002260_090 Hb_001892_120 Hb_001892_120 Hb_010589_110--Hb_001892_120 Hb_160837_010 Hb_160837_010 Hb_030370_030--Hb_160837_010 Hb_000544_110 Hb_000544_110 Hb_030370_030--Hb_000544_110 Hb_000803_050 Hb_000803_050 Hb_030370_030--Hb_000803_050 Hb_001102_250 Hb_001102_250 Hb_030370_030--Hb_001102_250 Hb_005908_040 Hb_005908_040 Hb_030370_030--Hb_005908_040 Hb_000123_110 Hb_000123_110 Hb_000029_270--Hb_000123_110 Hb_000127_020 Hb_000127_020 Hb_000029_270--Hb_000127_020 Hb_005867_040 Hb_005867_040 Hb_000029_270--Hb_005867_040 Hb_000107_650 Hb_000107_650 Hb_000029_270--Hb_000107_650 Hb_001766_100 Hb_001766_100 Hb_000029_270--Hb_001766_100 Hb_003020_310 Hb_003020_310 Hb_000077_410--Hb_003020_310 Hb_000178_110 Hb_000178_110 Hb_000077_410--Hb_000178_110 Hb_012725_110 Hb_012725_110 Hb_000077_410--Hb_012725_110 Hb_000077_410--Hb_002260_090 Hb_000836_500 Hb_000836_500 Hb_000077_410--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_000077_410--Hb_002291_030 Hb_000699_120--Hb_000178_110 Hb_000699_120--Hb_000077_410 Hb_113951_010 Hb_113951_010 Hb_000699_120--Hb_113951_010 Hb_000699_120--Hb_012725_110 Hb_004705_030 Hb_004705_030 Hb_000699_120--Hb_004705_030 Hb_000699_120--Hb_000836_500 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_001213_120 Hb_001213_120 Hb_002260_090--Hb_001213_120 Hb_011671_400 Hb_011671_400 Hb_002260_090--Hb_011671_400 Hb_003052_040 Hb_003052_040 Hb_002260_090--Hb_003052_040 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_002260_090--Hb_005908_040 Hb_002820_140 Hb_002820_140 Hb_001892_120--Hb_002820_140 Hb_002099_050 Hb_002099_050 Hb_001892_120--Hb_002099_050 Hb_001279_130 Hb_001279_130 Hb_001892_120--Hb_001279_130 Hb_001892_120--Hb_000699_120 Hb_000638_020 Hb_000638_020 Hb_001892_120--Hb_000638_020 Hb_001892_120--Hb_002260_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0581288 0 0 0 0 0.0114732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0266303 0.0628566 0.039559 0.00834862 0

CAGE analysis