Hb_010589_130

Information

Type -
Description -
Location Contig10589: 90389-91023
Sequence    

Annotation

kegg
ID bvg:104884346
description uncharacterized LOC104884346
nr
ID XP_010667291.1
description PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A061DJL4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_001655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01930: 90431-91243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_130 0.0 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
2 Hb_078901_010 0.1201483968 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_000434_050 0.1282597715 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
4 Hb_009040_010 0.1328950806 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
5 Hb_003375_080 0.1371629294 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
6 Hb_102100_010 0.1389726035 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_181824_010 0.1402787384 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_001989_060 0.1420365241 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
9 Hb_001345_030 0.1447205249 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
10 Hb_009476_010 0.1461790521 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
11 Hb_185080_010 0.1484867985 - - -
12 Hb_000103_400 0.1509817793 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
13 Hb_009247_020 0.1533882859 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
14 Hb_033149_020 0.1554954302 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_132840_090 0.1564219801 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
16 Hb_005568_060 0.1569843363 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
17 Hb_011360_090 0.157840165 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_011287_020 0.1603046723 - - ATP binding protein, putative [Ricinus communis]
19 Hb_004787_100 0.1609293544 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
20 Hb_000373_250 0.1620846004 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]

Gene co-expression network

sample Hb_010589_130 Hb_010589_130 Hb_078901_010 Hb_078901_010 Hb_010589_130--Hb_078901_010 Hb_000434_050 Hb_000434_050 Hb_010589_130--Hb_000434_050 Hb_009040_010 Hb_009040_010 Hb_010589_130--Hb_009040_010 Hb_003375_080 Hb_003375_080 Hb_010589_130--Hb_003375_080 Hb_102100_010 Hb_102100_010 Hb_010589_130--Hb_102100_010 Hb_181824_010 Hb_181824_010 Hb_010589_130--Hb_181824_010 Hb_000805_150 Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_078901_010--Hb_000434_050 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_000015_180 Hb_000015_180 Hb_000434_050--Hb_000015_180 Hb_000434_050--Hb_000805_150 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090 Hb_002534_050 Hb_002534_050 Hb_009040_010--Hb_002534_050 Hb_011360_090 Hb_011360_090 Hb_009040_010--Hb_011360_090 Hb_001258_150 Hb_001258_150 Hb_009040_010--Hb_001258_150 Hb_000071_140 Hb_000071_140 Hb_009040_010--Hb_000071_140 Hb_132840_090 Hb_132840_090 Hb_009040_010--Hb_132840_090 Hb_001662_170 Hb_001662_170 Hb_009040_010--Hb_001662_170 Hb_003375_080--Hb_185080_010 Hb_001004_010 Hb_001004_010 Hb_003375_080--Hb_001004_010 Hb_003375_080--Hb_078901_010 Hb_000819_040 Hb_000819_040 Hb_003375_080--Hb_000819_040 Hb_003375_080--Hb_009476_010 Hb_056012_010 Hb_056012_010 Hb_102100_010--Hb_056012_010 Hb_102100_010--Hb_000015_180 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27852 52.5753 13.2345 8.39991 2.31702 1.10895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15139 0.150729 0.970813 1.73731 4.80002

CAGE analysis