Hb_010594_030

Information

Type -
Description -
Location Contig10594: 45066-58530
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01953: 45040-55434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010594_030 0.0 - - -
2 Hb_034585_050 0.1029704893 - - -
3 Hb_001102_250 0.1104644118 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
4 Hb_002492_020 0.1283337382 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
5 Hb_005211_070 0.1294567696 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
6 Hb_012395_210 0.1338215556 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006351_110 0.1359449373 - - -
8 Hb_002326_180 0.1377970353 - - Protein Z, putative [Ricinus communis]
9 Hb_001279_130 0.1387262686 - - hypothetical protein L484_017676 [Morus notabilis]
10 Hb_005539_210 0.1401956269 - - -
11 Hb_001123_120 0.1421734461 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
12 Hb_004297_040 0.1426768355 - - acyl CoA reductase [Hevea brasiliensis]
13 Hb_011689_050 0.144448095 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
14 Hb_003349_070 0.1453607338 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
15 Hb_002918_140 0.1457981295 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
16 Hb_072912_020 0.1481888507 - - abhydrolase domain containing, putative [Ricinus communis]
17 Hb_001213_120 0.148552585 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
18 Hb_000544_110 0.1486235122 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
19 Hb_002007_050 0.1488333623 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
20 Hb_001012_040 0.1507679396 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010594_030 Hb_010594_030 Hb_034585_050 Hb_034585_050 Hb_010594_030--Hb_034585_050 Hb_001102_250 Hb_001102_250 Hb_010594_030--Hb_001102_250 Hb_002492_020 Hb_002492_020 Hb_010594_030--Hb_002492_020 Hb_005211_070 Hb_005211_070 Hb_010594_030--Hb_005211_070 Hb_012395_210 Hb_012395_210 Hb_010594_030--Hb_012395_210 Hb_006351_110 Hb_006351_110 Hb_010594_030--Hb_006351_110 Hb_002918_140 Hb_002918_140 Hb_034585_050--Hb_002918_140 Hb_006738_010 Hb_006738_010 Hb_034585_050--Hb_006738_010 Hb_003043_120 Hb_003043_120 Hb_034585_050--Hb_003043_120 Hb_011245_020 Hb_011245_020 Hb_034585_050--Hb_011245_020 Hb_017862_010 Hb_017862_010 Hb_034585_050--Hb_017862_010 Hb_072912_020 Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_005137_020 Hb_005137_020 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_010166_020 Hb_010166_020 Hb_002492_020--Hb_010166_020 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_005539_210 Hb_005539_210 Hb_002492_020--Hb_005539_210 Hb_001198_030 Hb_001198_030 Hb_002492_020--Hb_001198_030 Hb_007741_040 Hb_007741_040 Hb_002492_020--Hb_007741_040 Hb_005211_070--Hb_002492_020 Hb_010827_020 Hb_010827_020 Hb_005211_070--Hb_010827_020 Hb_000215_180 Hb_000215_180 Hb_005211_070--Hb_000215_180 Hb_005211_070--Hb_005539_210 Hb_000676_240 Hb_000676_240 Hb_005211_070--Hb_000676_240 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_001213_120 Hb_001213_120 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_012395_210--Hb_001102_250 Hb_012395_210--Hb_005539_210 Hb_010172_100 Hb_010172_100 Hb_006351_110--Hb_010172_100 Hb_004159_050 Hb_004159_050 Hb_006351_110--Hb_004159_050 Hb_006351_110--Hb_001102_250 Hb_000103_550 Hb_000103_550 Hb_006351_110--Hb_000103_550 Hb_000316_100 Hb_000316_100 Hb_006351_110--Hb_000316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.37655 1.57396 0.426051 0.121776 4.9223 6.0112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2008 39.767 17.438 6.12432 0.598444

CAGE analysis