Hb_010608_010

Information

Type -
Description -
Location Contig10608: 11422-17032
Sequence    

Annotation

kegg
ID rcu:RCOM_1689450
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012086799.1
description PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
swissprot
ID Q42479
description Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana GN=CPK3 PE=1 SV=1
trembl
ID A0A067K0N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20515 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01989: 11389-11611 , PASA_asmbl_01990: 13454-16188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010608_010 0.0 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
2 Hb_028639_060 0.0679085629 - - transporter, putative [Ricinus communis]
3 Hb_000749_150 0.0693196434 - - -
4 Hb_003642_060 0.0746749999 - - hypothetical protein RCOM_1189860 [Ricinus communis]
5 Hb_001214_130 0.0750118423 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
6 Hb_033642_010 0.0804383318 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
7 Hb_000905_190 0.0841828407 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
8 Hb_001246_100 0.0841954224 - - Ras-related small GTP-binding family protein [Theobroma cacao]
9 Hb_000442_160 0.0847227062 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
10 Hb_009111_050 0.0860384131 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
11 Hb_005063_040 0.0875613135 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
12 Hb_001855_010 0.089557159 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
13 Hb_000803_150 0.0904252624 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
14 Hb_001135_160 0.0906258727 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
15 Hb_006447_010 0.0911448572 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
16 Hb_000120_500 0.0915281179 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
17 Hb_000157_030 0.092168603 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
18 Hb_003120_060 0.0945138126 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
19 Hb_003777_270 0.0946875758 - - 60S ribosomal protein L3B [Hevea brasiliensis]
20 Hb_003005_020 0.0947249037 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_010608_010 Hb_010608_010 Hb_028639_060 Hb_028639_060 Hb_010608_010--Hb_028639_060 Hb_000749_150 Hb_000749_150 Hb_010608_010--Hb_000749_150 Hb_003642_060 Hb_003642_060 Hb_010608_010--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_010608_010--Hb_001214_130 Hb_033642_010 Hb_033642_010 Hb_010608_010--Hb_033642_010 Hb_000905_190 Hb_000905_190 Hb_010608_010--Hb_000905_190 Hb_028639_060--Hb_001214_130 Hb_028639_060--Hb_003642_060 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000012_090 Hb_000012_090 Hb_028639_060--Hb_000012_090 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_003642_060--Hb_001214_130 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_001214_130--Hb_000803_150 Hb_028872_140 Hb_028872_140 Hb_033642_010--Hb_028872_140 Hb_009111_050 Hb_009111_050 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7141 6.51477 8.39527 5.18102 21.7351 38.1258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5126 17.431 17.3743 9.27808 4.30672

CAGE analysis