Hb_010608_040

Information

Type -
Description -
Location Contig10608: 58650-61987
Sequence    

Annotation

kegg
ID rcu:RCOM_1689470
description hypothetical protein
nr
ID XP_012086798.1
description PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
swissprot
ID Q9LS46
description Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1
trembl
ID B9RCK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689470 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01991: 58830-59397 , PASA_asmbl_01992: 59524-61385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010608_040 0.0 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
2 Hb_007290_010 0.0795102916 - - cytochrome P450, putative [Ricinus communis]
3 Hb_002326_090 0.0851871976 - - amino acid transporter, putative [Ricinus communis]
4 Hb_000796_110 0.091779042 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
5 Hb_097213_010 0.0981657196 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
6 Hb_007292_060 0.0985735001 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
7 Hb_000175_600 0.0991214265 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
8 Hb_004102_180 0.0998393416 - - zinc finger family protein [Populus trichocarpa]
9 Hb_001416_120 0.1012992385 - - caspase, putative [Ricinus communis]
10 Hb_004137_090 0.1019314435 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
11 Hb_122079_010 0.1021197708 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
12 Hb_010812_080 0.1028879251 - - PREDICTED: methylesterase 17 [Jatropha curcas]
13 Hb_003561_020 0.1034889131 - - gulonolactone oxidase, putative [Ricinus communis]
14 Hb_090210_010 0.1053763702 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
15 Hb_000053_150 0.1068651377 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
16 Hb_000896_030 0.1087193265 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010327_040 0.112030074 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
18 Hb_026196_020 0.1123433622 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_001369_490 0.1143034349 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
20 Hb_011218_010 0.1145178432 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]

Gene co-expression network

sample Hb_010608_040 Hb_010608_040 Hb_007290_010 Hb_007290_010 Hb_010608_040--Hb_007290_010 Hb_002326_090 Hb_002326_090 Hb_010608_040--Hb_002326_090 Hb_000796_110 Hb_000796_110 Hb_010608_040--Hb_000796_110 Hb_097213_010 Hb_097213_010 Hb_010608_040--Hb_097213_010 Hb_007292_060 Hb_007292_060 Hb_010608_040--Hb_007292_060 Hb_000175_600 Hb_000175_600 Hb_010608_040--Hb_000175_600 Hb_003561_020 Hb_003561_020 Hb_007290_010--Hb_003561_020 Hb_004137_090 Hb_004137_090 Hb_007290_010--Hb_004137_090 Hb_004102_180 Hb_004102_180 Hb_007290_010--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_007290_010--Hb_069384_010 Hb_011218_010 Hb_011218_010 Hb_007290_010--Hb_011218_010 Hb_002326_090--Hb_007292_060 Hb_002326_090--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_002326_090--Hb_000964_120 Hb_090210_010 Hb_090210_010 Hb_002326_090--Hb_090210_010 Hb_002326_090--Hb_004102_180 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_153258_030 Hb_153258_030 Hb_000796_110--Hb_153258_030 Hb_002999_020 Hb_002999_020 Hb_000796_110--Hb_002999_020 Hb_001416_120 Hb_001416_120 Hb_000796_110--Hb_001416_120 Hb_000742_040 Hb_000742_040 Hb_000796_110--Hb_000742_040 Hb_000796_110--Hb_090210_010 Hb_000934_120 Hb_000934_120 Hb_000796_110--Hb_000934_120 Hb_000392_080 Hb_000392_080 Hb_097213_010--Hb_000392_080 Hb_012799_010 Hb_012799_010 Hb_097213_010--Hb_012799_010 Hb_097213_010--Hb_000175_600 Hb_097213_010--Hb_002326_090 Hb_000099_110 Hb_000099_110 Hb_097213_010--Hb_000099_110 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_090210_010 Hb_007292_060--Hb_000175_600 Hb_007292_060--Hb_004102_180 Hb_007292_060--Hb_011218_010 Hb_000175_600--Hb_004102_180 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_000175_600--Hb_011218_010 Hb_000175_600--Hb_000964_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.274801 2.19194 12.0772 0 0.0123403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.281546

CAGE analysis