Hb_010608_050

Information

Type -
Description -
Location Contig10608: 79326-81374
Sequence    

Annotation

kegg
ID rcu:RCOM_1689480
description transcription factor, putative
nr
ID XP_012086797.1
description PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067JNA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20513 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01993: 78913-84499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010608_050 0.0 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
2 Hb_008695_100 0.0749479005 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
3 Hb_004607_030 0.0767016082 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
4 Hb_011030_020 0.0803097635 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
5 Hb_000617_150 0.0808786931 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
6 Hb_001699_130 0.0824018945 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
7 Hb_011534_030 0.0883516577 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
8 Hb_000723_080 0.0897385467 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
9 Hb_002235_280 0.0900098437 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
10 Hb_001959_190 0.0905654843 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
11 Hb_005162_070 0.0919272564 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_570 0.0924592493 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004846_070 0.0924949161 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
14 Hb_000567_120 0.0929183315 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
15 Hb_000748_130 0.0972555162 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
16 Hb_000373_130 0.0977188345 - - PREDICTED: protein FAM188A [Jatropha curcas]
17 Hb_000367_060 0.0983365306 - - diacylglycerol kinase, theta, putative [Ricinus communis]
18 Hb_001454_190 0.10000574 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
19 Hb_025557_030 0.1004489038 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
20 Hb_000482_010 0.1011533609 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]

Gene co-expression network

sample Hb_010608_050 Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_010608_050--Hb_008695_100 Hb_004607_030 Hb_004607_030 Hb_010608_050--Hb_004607_030 Hb_011030_020 Hb_011030_020 Hb_010608_050--Hb_011030_020 Hb_000617_150 Hb_000617_150 Hb_010608_050--Hb_000617_150 Hb_001699_130 Hb_001699_130 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_000723_080 Hb_000723_080 Hb_008695_100--Hb_000723_080 Hb_000567_120 Hb_000567_120 Hb_008695_100--Hb_000567_120 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_008695_100--Hb_000617_150 Hb_002235_280 Hb_002235_280 Hb_008695_100--Hb_002235_280 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_004607_030--Hb_000567_120 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_011030_020--Hb_008695_100 Hb_011030_020--Hb_000617_150 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_001699_130--Hb_000696_040 Hb_001699_130--Hb_000120_680 Hb_001699_130--Hb_000723_080 Hb_016901_010 Hb_016901_010 Hb_001699_130--Hb_016901_010 Hb_011534_030--Hb_172932_010 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_011534_030--Hb_001454_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7386 45.6225 13.4867 40.4602 36.7329 57.5847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.2991 108.74 153.195 41.8696 44.2022

CAGE analysis