Hb_010614_010

Information

Type -
Description -
Location Contig10614: 10871-16593
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14960g
description POPTRDRAFT_574486; leucine-rich repeat transmembrane protein kinase
nr
ID XP_002325645.2
description leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID B9INM7
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0019s14960g PE=4 SV=2
Gene Ontology
ID GO:0016772
description leucine-rich repeat receptor-like protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010614_010 0.0 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
2 Hb_000732_160 0.0931118822 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
3 Hb_094439_010 0.1080999431 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
4 Hb_010904_010 0.1314482331 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
5 Hb_004241_170 0.1339478013 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
6 Hb_001631_110 0.1356358433 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
7 Hb_004767_020 0.1415336044 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
8 Hb_004800_140 0.1432353531 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
9 Hb_064293_010 0.1447940818 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_171168_010 0.1531973446 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_031685_010 0.1540133301 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_002768_080 0.1601641514 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_002849_120 0.1618607286 - - ferric reductase oxidase [Manihot esculenta]
14 Hb_000340_380 0.1638106257 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
15 Hb_003387_080 0.1639959143 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_183025_010 0.1640983478 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
17 Hb_000594_150 0.1657963694 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
18 Hb_000417_250 0.1661040569 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
19 Hb_029095_010 0.1661342193 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
20 Hb_000680_020 0.1663416032 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010614_010 Hb_010614_010 Hb_000732_160 Hb_000732_160 Hb_010614_010--Hb_000732_160 Hb_094439_010 Hb_094439_010 Hb_010614_010--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_010614_010--Hb_010904_010 Hb_004241_170 Hb_004241_170 Hb_010614_010--Hb_004241_170 Hb_001631_110 Hb_001631_110 Hb_010614_010--Hb_001631_110 Hb_004767_020 Hb_004767_020 Hb_010614_010--Hb_004767_020 Hb_031685_010 Hb_031685_010 Hb_000732_160--Hb_031685_010 Hb_000732_160--Hb_094439_010 Hb_000732_160--Hb_010904_010 Hb_000732_160--Hb_001631_110 Hb_000732_160--Hb_004241_170 Hb_007113_020 Hb_007113_020 Hb_094439_010--Hb_007113_020 Hb_094439_010--Hb_031685_010 Hb_029095_010 Hb_029095_010 Hb_094439_010--Hb_029095_010 Hb_093364_010 Hb_093364_010 Hb_094439_010--Hb_093364_010 Hb_003970_010 Hb_003970_010 Hb_010904_010--Hb_003970_010 Hb_002211_020 Hb_002211_020 Hb_010904_010--Hb_002211_020 Hb_171168_010 Hb_171168_010 Hb_010904_010--Hb_171168_010 Hb_008202_010 Hb_008202_010 Hb_010904_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_010904_010--Hb_000110_040 Hb_008341_010 Hb_008341_010 Hb_004241_170--Hb_008341_010 Hb_004241_170--Hb_001631_110 Hb_010091_030 Hb_010091_030 Hb_004241_170--Hb_010091_030 Hb_004800_140 Hb_004800_140 Hb_004241_170--Hb_004800_140 Hb_010175_050 Hb_010175_050 Hb_004241_170--Hb_010175_050 Hb_001631_110--Hb_008341_010 Hb_001631_110--Hb_010091_030 Hb_001631_110--Hb_004800_140 Hb_017098_020 Hb_017098_020 Hb_001631_110--Hb_017098_020 Hb_064293_010 Hb_064293_010 Hb_004767_020--Hb_064293_010 Hb_119327_010 Hb_119327_010 Hb_004767_020--Hb_119327_010 Hb_002849_120 Hb_002849_120 Hb_004767_020--Hb_002849_120 Hb_004767_020--Hb_171168_010 Hb_004767_020--Hb_007113_020 Hb_000680_020 Hb_000680_020 Hb_004767_020--Hb_000680_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.28377 0.285806 0.0439678 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0100992 0 0 0.0818236 0.238655

CAGE analysis