Hb_010614_020

Information

Type -
Description -
Location Contig10614: 11337-12218
Sequence    

Annotation

kegg
ID zma:100501502
description uncharacterized LOC100501502
nr
ID CDX73349.1
description BnaC05g27570D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A0E0M8K0
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010614_020 0.0 - - BnaC05g27570D [Brassica napus]
2 Hb_004635_040 0.0512750768 - - Polyprotein, putative [Solanum demissum]
3 Hb_007403_010 0.0625623718 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
4 Hb_036356_010 0.0774221048 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_002044_110 0.0991783968 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
6 Hb_002894_040 0.11177247 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002217_210 0.1179394179 - - -
8 Hb_008959_050 0.1232992386 transcription factor TF Family: Orphans PREDICTED: late secretory pathway protein AVL9-like isoform X2 [Jatropha curcas]
9 Hb_006020_010 0.139086541 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
10 Hb_004218_220 0.1399140498 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_010573_040 0.1406331967 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
12 Hb_005144_100 0.1481674813 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
13 Hb_002236_070 0.1484836645 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
14 Hb_001922_020 0.1566630861 - - conserved hypothetical protein [Ricinus communis]
15 Hb_183820_010 0.1728876748 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_012395_150 0.1730829751 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
17 Hb_000365_290 0.1746046433 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
18 Hb_004590_010 0.174990711 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
19 Hb_017661_020 0.1751175872 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
20 Hb_179118_010 0.1753693181 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010614_020 Hb_010614_020 Hb_004635_040 Hb_004635_040 Hb_010614_020--Hb_004635_040 Hb_007403_010 Hb_007403_010 Hb_010614_020--Hb_007403_010 Hb_036356_010 Hb_036356_010 Hb_010614_020--Hb_036356_010 Hb_002044_110 Hb_002044_110 Hb_010614_020--Hb_002044_110 Hb_002894_040 Hb_002894_040 Hb_010614_020--Hb_002894_040 Hb_002217_210 Hb_002217_210 Hb_010614_020--Hb_002217_210 Hb_004635_040--Hb_002217_210 Hb_004635_040--Hb_007403_010 Hb_004635_040--Hb_002044_110 Hb_005144_100 Hb_005144_100 Hb_004635_040--Hb_005144_100 Hb_004635_040--Hb_036356_010 Hb_007403_010--Hb_002894_040 Hb_007403_010--Hb_036356_010 Hb_007403_010--Hb_002044_110 Hb_017661_020 Hb_017661_020 Hb_007403_010--Hb_017661_020 Hb_036356_010--Hb_002044_110 Hb_010573_040 Hb_010573_040 Hb_036356_010--Hb_010573_040 Hb_008959_050 Hb_008959_050 Hb_036356_010--Hb_008959_050 Hb_002044_110--Hb_002217_210 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_002044_110--Hb_008959_050 Hb_000002_230 Hb_000002_230 Hb_002894_040--Hb_000002_230 Hb_002894_040--Hb_008959_050 Hb_007313_050 Hb_007313_050 Hb_002894_040--Hb_007313_050 Hb_002894_040--Hb_004218_220 Hb_002217_210--Hb_005144_100 Hb_001922_020 Hb_001922_020 Hb_002217_210--Hb_001922_020 Hb_002217_210--Hb_008959_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.15967 0.0567821 0.142343 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.107705 0

CAGE analysis