Hb_010618_010

Information

Type -
Description -
Location Contig10618: 11495-28327
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01980g
description hypothetical protein
nr
ID XP_012075094.1
description PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
swissprot
ID Q8RY59
description Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1
trembl
ID A0A067KGT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10829 PE=4 SV=1
Gene Ontology
ID GO:0003950
description inactive poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01999: 10674-28252 , PASA_asmbl_02000: 10955-11334 , PASA_asmbl_02001: 12536-13550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010618_010 0.0 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
2 Hb_001248_060 0.0283669084 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001409_020 0.0393321404 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
4 Hb_015934_040 0.051769978 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
5 Hb_000225_040 0.0529317601 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_002518_280 0.0531243188 - - phosphate transporter [Manihot esculenta]
7 Hb_011995_010 0.0542365565 - - dc50, putative [Ricinus communis]
8 Hb_016172_020 0.0561717983 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
9 Hb_167498_010 0.0575681288 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
10 Hb_000152_380 0.0576080221 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
11 Hb_013399_100 0.0597860169 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004221_020 0.0609115687 - - protein binding protein, putative [Ricinus communis]
13 Hb_000289_060 0.0611060551 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
14 Hb_000563_320 0.061363434 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
15 Hb_006634_070 0.0619794072 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
16 Hb_000011_200 0.0626033338 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
17 Hb_001341_170 0.0630642373 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
18 Hb_007576_110 0.0630948507 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
19 Hb_123352_020 0.0632327972 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
20 Hb_000173_490 0.0639461586 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010618_010 Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_010618_010--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_001248_060--Hb_001409_020 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_000225_040--Hb_167498_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_000152_380 Hb_000152_380 Hb_002518_280--Hb_000152_380 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7011 17.4372 13.056 14.5395 19.8343 23.8214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9937 19.4331 21.2965 16.6177 13.2256

CAGE analysis