Hb_010620_020

Information

Type -
Description -
Location Contig10620: 16109-18355
Sequence    

Annotation

kegg
ID rcu:RCOM_1573450
description receptor protein kinase, putative
nr
ID XP_002513300.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LJY0
description Pollen receptor-like kinase 4 OS=Arabidopsis thaliana GN=PRK4 PE=1 SV=1
trembl
ID B9RHT1
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1573450 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probably inactive leucine-rich repeat receptor-like protein kinase at1g50610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010620_020 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_129399_010 0.1079113483 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000146_110 0.1083896799 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
4 Hb_000003_620 0.1089639142 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
5 Hb_009778_030 0.1286572258 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
6 Hb_001363_030 0.1412464128 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
7 Hb_000111_130 0.1459358606 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
8 Hb_108055_010 0.1476607411 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000465_380 0.1488501136 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_010962_030 0.1526008269 - - kinase, putative [Ricinus communis]
11 Hb_007371_020 0.1552627171 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
12 Hb_001365_040 0.1564428568 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
13 Hb_001008_160 0.1573580204 - - -
14 Hb_002890_060 0.1575902408 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
15 Hb_001009_110 0.158666475 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
16 Hb_010327_010 0.160787393 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_010921_060 0.1611781852 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000668_160 0.1632009636 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
19 Hb_001825_020 0.1636884953 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_002783_300 0.1673453419 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010620_020 Hb_010620_020 Hb_129399_010 Hb_129399_010 Hb_010620_020--Hb_129399_010 Hb_000146_110 Hb_000146_110 Hb_010620_020--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_010620_020--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010620_020--Hb_009778_030 Hb_001363_030 Hb_001363_030 Hb_010620_020--Hb_001363_030 Hb_000111_130 Hb_000111_130 Hb_010620_020--Hb_000111_130 Hb_108055_010 Hb_108055_010 Hb_129399_010--Hb_108055_010 Hb_000465_380 Hb_000465_380 Hb_129399_010--Hb_000465_380 Hb_129399_010--Hb_000146_110 Hb_129399_010--Hb_000003_620 Hb_010921_060 Hb_010921_060 Hb_129399_010--Hb_010921_060 Hb_000146_110--Hb_000003_620 Hb_000146_110--Hb_009778_030 Hb_002890_060 Hb_002890_060 Hb_000146_110--Hb_002890_060 Hb_000146_110--Hb_000111_130 Hb_000123_310 Hb_000123_310 Hb_000146_110--Hb_000123_310 Hb_007371_020 Hb_007371_020 Hb_000146_110--Hb_007371_020 Hb_000003_620--Hb_009778_030 Hb_000003_620--Hb_000111_130 Hb_000003_620--Hb_001363_030 Hb_000003_620--Hb_007371_020 Hb_001365_040 Hb_001365_040 Hb_000003_620--Hb_001365_040 Hb_009778_030--Hb_002890_060 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_009778_030--Hb_001363_030 Hb_001363_030--Hb_001365_040 Hb_004970_130 Hb_004970_130 Hb_001363_030--Hb_004970_130 Hb_118777_010 Hb_118777_010 Hb_001363_030--Hb_118777_010 Hb_001363_030--Hb_000111_130 Hb_001274_040 Hb_001274_040 Hb_000111_130--Hb_001274_040 Hb_000111_130--Hb_002890_060 Hb_000111_130--Hb_001365_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.70203 0.091085 0.114431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0192867 0.0364972 0.430011 0.284667

CAGE analysis