Hb_010642_010

Information

Type -
Description -
Location Contig10642: 1471-3193
Sequence    

Annotation

kegg
ID rcu:RCOM_1492500
description tonoplast intrinsic protein, putative
nr
ID XP_012073404.1
description PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
swissprot
ID Q41951
description Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2
trembl
ID A0A067KQM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06324 PE=3 SV=1
Gene Ontology
ID GO:0000326
description aquaporin tip2-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02027: 1369-3252 , PASA_asmbl_02028: 1589-3252
cDNA
(Sanger)
(ID:Location)		 048_P04.ab1: 1369-3023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010642_010 0.0 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
2 Hb_030827_080 0.0637584216 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
3 Hb_002739_160 0.0701414296 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_008352_020 0.0750932093 - - hypothetical protein [Cecembia lonarensis]
5 Hb_038718_010 0.0955284764 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_003939_090 0.0969716523 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_001198_180 0.0992924696 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_015884_010 0.0996008421 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
9 Hb_145268_010 0.1037432361 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
10 Hb_000128_090 0.1042088967 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_002325_050 0.1052756992 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
12 Hb_000714_070 0.1070595522 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
13 Hb_153180_010 0.1137343312 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
14 Hb_011355_020 0.1148926709 - - extensin, proline-rich protein, putative [Ricinus communis]
15 Hb_001663_090 0.1178096481 - - ribonuclease t2, putative [Ricinus communis]
16 Hb_008725_020 0.1202453183 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
17 Hb_002897_030 0.121125793 - - PREDICTED: methylesterase 17 [Jatropha curcas]
18 Hb_170632_010 0.1251330902 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
19 Hb_001562_030 0.1313452467 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
20 Hb_004324_100 0.1314011308 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010642_010 Hb_010642_010 Hb_030827_080 Hb_030827_080 Hb_010642_010--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_010642_010--Hb_002739_160 Hb_008352_020 Hb_008352_020 Hb_010642_010--Hb_008352_020 Hb_038718_010 Hb_038718_010 Hb_010642_010--Hb_038718_010 Hb_003939_090 Hb_003939_090 Hb_010642_010--Hb_003939_090 Hb_001198_180 Hb_001198_180 Hb_010642_010--Hb_001198_180 Hb_030827_080--Hb_002739_160 Hb_030827_080--Hb_008352_020 Hb_153180_010 Hb_153180_010 Hb_030827_080--Hb_153180_010 Hb_030827_080--Hb_001198_180 Hb_001663_090 Hb_001663_090 Hb_030827_080--Hb_001663_090 Hb_002739_160--Hb_153180_010 Hb_002739_160--Hb_008352_020 Hb_002739_160--Hb_001198_180 Hb_002739_160--Hb_001663_090 Hb_145268_010 Hb_145268_010 Hb_008352_020--Hb_145268_010 Hb_000028_330 Hb_000028_330 Hb_008352_020--Hb_000028_330 Hb_008352_020--Hb_001663_090 Hb_000128_090 Hb_000128_090 Hb_038718_010--Hb_000128_090 Hb_002035_020 Hb_002035_020 Hb_038718_010--Hb_002035_020 Hb_170632_010 Hb_170632_010 Hb_038718_010--Hb_170632_010 Hb_011355_020 Hb_011355_020 Hb_038718_010--Hb_011355_020 Hb_033053_020 Hb_033053_020 Hb_038718_010--Hb_033053_020 Hb_015884_010 Hb_015884_010 Hb_003939_090--Hb_015884_010 Hb_007313_050 Hb_007313_050 Hb_003939_090--Hb_007313_050 Hb_000702_040 Hb_000702_040 Hb_003939_090--Hb_000702_040 Hb_035006_010 Hb_035006_010 Hb_003939_090--Hb_035006_010 Hb_021443_020 Hb_021443_020 Hb_003939_090--Hb_021443_020 Hb_001562_030 Hb_001562_030 Hb_001198_180--Hb_001562_030 Hb_002897_030 Hb_002897_030 Hb_001198_180--Hb_002897_030 Hb_001198_180--Hb_011355_020 Hb_008725_020 Hb_008725_020 Hb_001198_180--Hb_008725_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.837381 358.045 179.901 577.052 1.00592 0.446742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238323 0 0.256339 89.7694 46.8758

CAGE analysis