Hb_010642_030

Information

Type -
Description -
Location Contig10642: 4700-11126
Sequence    

Annotation

kegg
ID rcu:RCOM_1492180
description zinc phosphodiesterase, putative
nr
ID XP_002515997.1
description zinc phosphodiesterase, putative [Ricinus communis]
swissprot
ID Q8HY87
description Zinc phosphodiesterase ELAC protein 2 OS=Macaca fascicularis GN=ELAC2 PE=2 SV=1
trembl
ID B9RQH8
description Zinc phosphodiesterase, putative OS=Ricinus communis GN=RCOM_1492180 PE=4 SV=1
Gene Ontology
ID GO:0008033
description zinc phosphodiesterase elac protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02030: 4978-7432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010642_030 0.0 - - zinc phosphodiesterase, putative [Ricinus communis]
2 Hb_000364_080 0.0827045001 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
3 Hb_002784_060 0.1106359443 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
4 Hb_000523_090 0.1115029439 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
5 Hb_000627_030 0.1115212677 - - amine oxidase, putative [Ricinus communis]
6 Hb_002067_020 0.1130226629 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002942_160 0.1154546067 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
8 Hb_134364_010 0.1166076177 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
9 Hb_154745_010 0.1170594428 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_002044_060 0.1225233321 - - elongation factor ts, putative [Ricinus communis]
11 Hb_001380_020 0.1251708818 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
12 Hb_000567_050 0.1265234041 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
13 Hb_021596_030 0.1266499376 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
14 Hb_008489_020 0.1269463181 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
15 Hb_000086_380 0.1271709745 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
16 Hb_007741_020 0.1272001191 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
17 Hb_003641_060 0.1290416122 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
18 Hb_007632_020 0.129896915 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
19 Hb_006788_160 0.1312007887 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
20 Hb_000982_160 0.1321229527 - - PREDICTED: CLIP-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_010642_030 Hb_010642_030 Hb_000364_080 Hb_000364_080 Hb_010642_030--Hb_000364_080 Hb_002784_060 Hb_002784_060 Hb_010642_030--Hb_002784_060 Hb_000523_090 Hb_000523_090 Hb_010642_030--Hb_000523_090 Hb_000627_030 Hb_000627_030 Hb_010642_030--Hb_000627_030 Hb_002067_020 Hb_002067_020 Hb_010642_030--Hb_002067_020 Hb_002942_160 Hb_002942_160 Hb_010642_030--Hb_002942_160 Hb_000364_080--Hb_002942_160 Hb_000364_080--Hb_000523_090 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_134364_010 Hb_134364_010 Hb_000364_080--Hb_134364_010 Hb_000364_080--Hb_002067_020 Hb_000567_050 Hb_000567_050 Hb_002784_060--Hb_000567_050 Hb_002027_270 Hb_002027_270 Hb_002784_060--Hb_002027_270 Hb_006114_030 Hb_006114_030 Hb_002784_060--Hb_006114_030 Hb_012490_030 Hb_012490_030 Hb_002784_060--Hb_012490_030 Hb_000031_220 Hb_000031_220 Hb_002784_060--Hb_000031_220 Hb_000212_240 Hb_000212_240 Hb_002784_060--Hb_000212_240 Hb_000523_090--Hb_002067_020 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000364_060 Hb_000364_060 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280 Hb_000889_020 Hb_000889_020 Hb_000627_030--Hb_000889_020 Hb_000627_030--Hb_012490_030 Hb_000486_010 Hb_000486_010 Hb_000627_030--Hb_000486_010 Hb_003058_040 Hb_003058_040 Hb_000627_030--Hb_003058_040 Hb_003673_060 Hb_003673_060 Hb_000627_030--Hb_003673_060 Hb_009133_010 Hb_009133_010 Hb_000627_030--Hb_009133_010 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_003363_010 Hb_003363_010 Hb_002067_020--Hb_003363_010 Hb_002067_020--Hb_000364_060 Hb_002067_020--Hb_134364_010 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.28609 3.76199 2.24727 2.54167 4.50917 9.64906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.72379 3.31514 1.18513 3.12644 4.55162

CAGE analysis