Hb_010647_010

Information

Type -
Description -
Location Contig10647: 12-3301
Sequence    

Annotation

kegg
ID egr:104441780
description protein NP24-like
nr
ID XP_010053305.1
description PREDICTED: protein NP24-like [Eucalyptus grandis]
swissprot
ID E3SU11
description Thaumatin-like protein OS=Olea europaea PE=1 SV=1
trembl
ID A0A068V707
description Coffea canephora DH200=94 genomic scaffold, scaffold_120 OS=Coffea canephora GN=GSCOC_T00018006001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02033: 2248-3135
cDNA
(Sanger)
(ID:Location)		 009_E06.ab1: 2536-3122 , 017_C17.ab1: 2484-3131 , 021_A08.ab1: 2377-3135 , 038_H10.ab1: 2405-3131

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010647_010 0.0 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
2 Hb_002311_240 0.1004525817 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
3 Hb_000019_220 0.1369843013 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
4 Hb_012707_050 0.1376619176 - - hypothetical protein RCOM_1341590 [Ricinus communis]
5 Hb_001250_140 0.1436866941 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
6 Hb_073171_020 0.1555487939 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
7 Hb_000213_130 0.1643180284 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
8 Hb_005120_010 0.1663072813 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000712_060 0.1681404104 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
10 Hb_000828_020 0.1729961343 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_000221_200 0.1738880289 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
12 Hb_002876_310 0.1756296444 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
13 Hb_000045_230 0.1763183603 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
14 Hb_003057_080 0.1785127783 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
15 Hb_012506_080 0.1787013994 - - amino acid transporter, putative [Ricinus communis]
16 Hb_058620_010 0.1791442269 - - cytochrome P450, putative [Ricinus communis]
17 Hb_002249_180 0.1804758674 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_004693_010 0.1805216212 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
19 Hb_003237_040 0.1818443431 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
20 Hb_005000_310 0.1819153443 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]

Gene co-expression network

sample Hb_010647_010 Hb_010647_010 Hb_002311_240 Hb_002311_240 Hb_010647_010--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_010647_010--Hb_000019_220 Hb_012707_050 Hb_012707_050 Hb_010647_010--Hb_012707_050 Hb_001250_140 Hb_001250_140 Hb_010647_010--Hb_001250_140 Hb_073171_020 Hb_073171_020 Hb_010647_010--Hb_073171_020 Hb_000213_130 Hb_000213_130 Hb_010647_010--Hb_000213_130 Hb_002311_240--Hb_000019_220 Hb_002311_240--Hb_001250_140 Hb_003057_080 Hb_003057_080 Hb_002311_240--Hb_003057_080 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_000045_230 Hb_000045_230 Hb_000019_220--Hb_000045_230 Hb_000019_220--Hb_005000_310 Hb_000019_220--Hb_003057_080 Hb_002818_080 Hb_002818_080 Hb_000019_220--Hb_002818_080 Hb_000712_060 Hb_000712_060 Hb_012707_050--Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_012707_050--Hb_000828_020 Hb_001948_040 Hb_001948_040 Hb_012707_050--Hb_001948_040 Hb_009026_040 Hb_009026_040 Hb_012707_050--Hb_009026_040 Hb_000221_200 Hb_000221_200 Hb_012707_050--Hb_000221_200 Hb_002570_020 Hb_002570_020 Hb_012707_050--Hb_002570_020 Hb_058620_010 Hb_058620_010 Hb_001250_140--Hb_058620_010 Hb_000352_080 Hb_000352_080 Hb_001250_140--Hb_000352_080 Hb_012506_080 Hb_012506_080 Hb_001250_140--Hb_012506_080 Hb_135392_010 Hb_135392_010 Hb_001250_140--Hb_135392_010 Hb_001134_040 Hb_001134_040 Hb_001250_140--Hb_001134_040 Hb_000487_150 Hb_000487_150 Hb_073171_020--Hb_000487_150 Hb_002173_080 Hb_002173_080 Hb_073171_020--Hb_002173_080 Hb_039562_010 Hb_039562_010 Hb_073171_020--Hb_039562_010 Hb_000318_440 Hb_000318_440 Hb_073171_020--Hb_000318_440 Hb_000466_090 Hb_000466_090 Hb_073171_020--Hb_000466_090 Hb_006620_040 Hb_006620_040 Hb_073171_020--Hb_006620_040 Hb_000213_130--Hb_012506_080 Hb_004267_050 Hb_004267_050 Hb_000213_130--Hb_004267_050 Hb_022250_050 Hb_022250_050 Hb_000213_130--Hb_022250_050 Hb_001140_330 Hb_001140_330 Hb_000213_130--Hb_001140_330 Hb_005120_010 Hb_005120_010 Hb_000213_130--Hb_005120_010 Hb_001040_190 Hb_001040_190 Hb_000213_130--Hb_001040_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0296914 0.295281 0.772077 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.883124 1.0154 0.100115 33.1419 0.780142

CAGE analysis