Hb_010655_010

Information

Type -
Description -
Location Contig10655: 9083-26113
Sequence    

Annotation

kegg
ID rcu:RCOM_0588620
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID XP_002527812.1
description Cycloartenol synthase, putative [Ricinus communis]
swissprot
ID Q2XPU6
description Cycloartenol synthase OS=Ricinus communis PE=1 SV=1
trembl
ID B9SP93
description Terpene cyclase/mutase family member OS=Ricinus communis GN=RCOM_0588620 PE=3 SV=1
Gene Ontology
ID GO:0003824
description cycloartenol synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010655_010 0.0 - - Cycloartenol synthase, putative [Ricinus communis]
2 Hb_132835_010 0.077680767 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
3 Hb_032264_110 0.0792516381 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
4 Hb_001090_040 0.0837111048 - - Transmembrane protein 50A, putative [Ricinus communis]
5 Hb_000451_010 0.0894175258 - - secretory carrier membrane protein, putative [Ricinus communis]
6 Hb_004440_090 0.0941780523 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
7 Hb_004907_080 0.0944665072 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000529_190 0.0946115968 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
9 Hb_002449_020 0.095873779 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
10 Hb_002774_060 0.0962011797 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
11 Hb_000174_090 0.0965558947 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
12 Hb_000363_500 0.0967718042 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
13 Hb_004109_090 0.0973661516 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000115_330 0.0983982589 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
15 Hb_002506_020 0.0985230078 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
16 Hb_010931_090 0.1005140848 - - conserved hypothetical protein [Ricinus communis]
17 Hb_158467_010 0.1011240308 - - transporter, putative [Ricinus communis]
18 Hb_002149_020 0.1012267326 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
19 Hb_000329_030 0.1033937699 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
20 Hb_011671_240 0.1041525888 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]

Gene co-expression network

sample Hb_010655_010 Hb_010655_010 Hb_132835_010 Hb_132835_010 Hb_010655_010--Hb_132835_010 Hb_032264_110 Hb_032264_110 Hb_010655_010--Hb_032264_110 Hb_001090_040 Hb_001090_040 Hb_010655_010--Hb_001090_040 Hb_000451_010 Hb_000451_010 Hb_010655_010--Hb_000451_010 Hb_004440_090 Hb_004440_090 Hb_010655_010--Hb_004440_090 Hb_004907_080 Hb_004907_080 Hb_010655_010--Hb_004907_080 Hb_132835_010--Hb_004440_090 Hb_000069_110 Hb_000069_110 Hb_132835_010--Hb_000069_110 Hb_001703_030 Hb_001703_030 Hb_132835_010--Hb_001703_030 Hb_002609_020 Hb_002609_020 Hb_132835_010--Hb_002609_020 Hb_001975_140 Hb_001975_140 Hb_132835_010--Hb_001975_140 Hb_158467_010 Hb_158467_010 Hb_032264_110--Hb_158467_010 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040 Hb_001828_190 Hb_001828_190 Hb_001090_040--Hb_001828_190 Hb_000960_060 Hb_000960_060 Hb_001090_040--Hb_000960_060 Hb_001935_130 Hb_001935_130 Hb_001090_040--Hb_001935_130 Hb_000329_030 Hb_000329_030 Hb_001090_040--Hb_000329_030 Hb_000331_450 Hb_000331_450 Hb_001090_040--Hb_000331_450 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_004907_080--Hb_001009_270 Hb_004907_080--Hb_011671_240 Hb_004907_080--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_004907_080--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_004907_080--Hb_000777_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6275 4.45318 9.37838 15.4652 26.8371 22.6074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.909 21.181 25.9608 11.5943 6.27338

CAGE analysis