Hb_010661_020

Information

Type -
Description -
Location Contig10661: 17815-42353
Sequence    

Annotation

kegg
ID rcu:RCOM_1584120
description hypothetical protein
nr
ID XP_012068102.1
description PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
swissprot
ID Q80X82
description Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1
trembl
ID A0A067KZC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15944 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02057: 18514-19383 , PASA_asmbl_02058: 19106-30309 , PASA_asmbl_02060: 30674-31157 , PASA_asmbl_02061: 31167-39208 , PASA_asmbl_02062: 36558-39208 , PASA_asmbl_02063: 38230-38434 , PASA_asmbl_02064: 39211-42209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010661_020 0.0 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
2 Hb_005542_050 0.0539463911 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
3 Hb_000926_010 0.0671496147 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
4 Hb_002282_060 0.0675198084 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
5 Hb_155159_010 0.0687380552 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
6 Hb_001231_090 0.0689240972 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_005539_040 0.0716368572 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
8 Hb_001674_040 0.0727194129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
9 Hb_001534_210 0.073473022 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
10 Hb_011920_020 0.0741589459 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
11 Hb_004410_070 0.0749713888 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_002542_130 0.0792927858 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
13 Hb_010417_070 0.0822931186 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
14 Hb_002477_250 0.0828432618 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
15 Hb_007576_220 0.0840350165 - - PREDICTED: kanadaptin [Jatropha curcas]
16 Hb_000094_090 0.0845964877 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
17 Hb_002085_030 0.0854527531 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
18 Hb_002811_040 0.0861010197 - - 5'->3' exoribonuclease, putative [Ricinus communis]
19 Hb_004310_040 0.0862759836 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000723_110 0.0863461939 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010661_020 Hb_010661_020 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_002282_060 Hb_002282_060 Hb_010661_020--Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_010661_020--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040 Hb_002325_040 Hb_002325_040 Hb_005542_050--Hb_002325_040 Hb_005542_050--Hb_000926_010 Hb_000556_170 Hb_000556_170 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_002282_060--Hb_155159_010 Hb_002282_060--Hb_001231_090 Hb_002073_280 Hb_002073_280 Hb_002282_060--Hb_002073_280 Hb_002542_130 Hb_002542_130 Hb_002282_060--Hb_002542_130 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_155159_010--Hb_000703_130 Hb_155159_010--Hb_001231_090 Hb_001231_090--Hb_002542_130 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_000300_250 Hb_000300_250 Hb_005539_040--Hb_000300_250 Hb_009449_090 Hb_009449_090 Hb_005539_040--Hb_009449_090 Hb_007576_220 Hb_007576_220 Hb_005539_040--Hb_007576_220 Hb_005539_040--Hb_011920_020 Hb_001221_090 Hb_001221_090 Hb_005539_040--Hb_001221_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58401 13.6253 7.64685 4.66828 5.52063 6.02328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83387 3.61973 2.48268 5.99422 5.79866

CAGE analysis