Hb_010661_030

Information

Type -
Description -
Location Contig10661: 45456-47699
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G146200g
description hypothetical protein
nr
ID XP_007137674.1
description hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
swissprot
ID Q9SXC8
description Ubiquitin-fold modifier-conjugating enzyme 1 OS=Arabidopsis thaliana GN=At1g27530 PE=2 SV=1
trembl
ID V7AYJ5
description Ubiquitin-fold modifier-conjugating enzyme 1 OS=Phaseolus vulgaris GN=PHAVU_009G146200g PE=3 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-fold modifier-conjugating enzyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02065: 45487-47687 , PASA_asmbl_02067: 45542-46108 , PASA_asmbl_02069: 46563-46775
cDNA
(Sanger)
(ID:Location)		 015_H12.ab1: 45523-47550 , 046_D02.ab1: 45523-47560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010661_030 0.0 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
2 Hb_001635_170 0.0610435032 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
3 Hb_007576_040 0.0611515548 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
4 Hb_001404_100 0.0614862816 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
5 Hb_007154_020 0.0663054499 - - -
6 Hb_002233_150 0.0681706373 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
7 Hb_003069_010 0.0690945584 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
8 Hb_000392_440 0.070582268 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
9 Hb_002043_190 0.0726367001 - - rwd domain-containing protein, putative [Ricinus communis]
10 Hb_005993_040 0.0728493635 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
11 Hb_011360_140 0.072921856 - - 40S ribosomal protein S19, putative [Ricinus communis]
12 Hb_000866_270 0.0733314385 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
13 Hb_002968_060 0.0736686075 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
14 Hb_000661_250 0.0736964658 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
15 Hb_007951_060 0.0740826331 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_001512_060 0.0747628531 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
17 Hb_001259_090 0.0748018976 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
18 Hb_005186_050 0.0751150341 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
19 Hb_000327_120 0.075206565 - - FGFR1 oncogene partner, putative [Ricinus communis]
20 Hb_012627_050 0.0754436176 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010661_030 Hb_010661_030 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060 Hb_005993_040 Hb_005993_040 Hb_001404_100--Hb_005993_040 Hb_000771_120 Hb_000771_120 Hb_001404_100--Hb_000771_120 Hb_001404_100--Hb_002233_150 Hb_002043_190 Hb_002043_190 Hb_001404_100--Hb_002043_190 Hb_004491_010 Hb_004491_010 Hb_001404_100--Hb_004491_010 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_002233_150--Hb_000661_250 Hb_002233_150--Hb_002043_190 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180 Hb_003069_010--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_012627_050 Hb_012627_050 Hb_003069_010--Hb_012627_050 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
241.552 72.1236 117.952 57.4665 169.982 168.944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.781 216.129 133.393 84.9509 58.1666

CAGE analysis