Hb_010672_030

Information

Type -
Description -
Location Contig10672: 16956-18288
Sequence    

Annotation

kegg
ID rcu:RCOM_0082570
description hypothetical protein
nr
ID XP_012070839.1
description PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00897 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02078: 16962-17150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010672_030 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
2 Hb_008179_010 0.1491282956 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
3 Hb_001998_200 0.1499416518 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
4 Hb_002200_070 0.1529809036 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
5 Hb_003226_200 0.1591476203 - - magnesium/proton exchanger, putative [Ricinus communis]
6 Hb_000057_130 0.1596314887 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
7 Hb_000622_060 0.160533235 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
8 Hb_003371_070 0.1607295258 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
9 Hb_001975_030 0.1627139346 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
10 Hb_001269_070 0.1632593261 - - double-stranded RNA binding protein, putative [Ricinus communis]
11 Hb_000339_020 0.164829581 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
12 Hb_000110_060 0.1650304789 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
13 Hb_002780_030 0.1663167019 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
14 Hb_000861_100 0.1670502797 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
15 Hb_011310_180 0.1676231258 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
16 Hb_000070_110 0.1698501952 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
17 Hb_002486_020 0.172223493 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002529_090 0.1724220218 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
19 Hb_001842_020 0.1729181779 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
20 Hb_178968_080 0.173596533 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010672_030 Hb_010672_030 Hb_008179_010 Hb_008179_010 Hb_010672_030--Hb_008179_010 Hb_001998_200 Hb_001998_200 Hb_010672_030--Hb_001998_200 Hb_002200_070 Hb_002200_070 Hb_010672_030--Hb_002200_070 Hb_003226_200 Hb_003226_200 Hb_010672_030--Hb_003226_200 Hb_000057_130 Hb_000057_130 Hb_010672_030--Hb_000057_130 Hb_000622_060 Hb_000622_060 Hb_010672_030--Hb_000622_060 Hb_001269_070 Hb_001269_070 Hb_008179_010--Hb_001269_070 Hb_002475_140 Hb_002475_140 Hb_008179_010--Hb_002475_140 Hb_000388_060 Hb_000388_060 Hb_008179_010--Hb_000388_060 Hb_000086_390 Hb_000086_390 Hb_008179_010--Hb_000086_390 Hb_020378_060 Hb_020378_060 Hb_008179_010--Hb_020378_060 Hb_003935_080 Hb_003935_080 Hb_008179_010--Hb_003935_080 Hb_000012_110 Hb_000012_110 Hb_001998_200--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_001998_200--Hb_007590_090 Hb_001817_100 Hb_001817_100 Hb_001998_200--Hb_001817_100 Hb_004007_110 Hb_004007_110 Hb_001998_200--Hb_004007_110 Hb_002615_030 Hb_002615_030 Hb_001998_200--Hb_002615_030 Hb_003602_060 Hb_003602_060 Hb_001998_200--Hb_003602_060 Hb_001621_100 Hb_001621_100 Hb_002200_070--Hb_001621_100 Hb_000861_100 Hb_000861_100 Hb_002200_070--Hb_000861_100 Hb_031089_020 Hb_031089_020 Hb_002200_070--Hb_031089_020 Hb_003371_070 Hb_003371_070 Hb_002200_070--Hb_003371_070 Hb_002200_070--Hb_000057_130 Hb_003470_110 Hb_003470_110 Hb_002200_070--Hb_003470_110 Hb_033152_110 Hb_033152_110 Hb_003226_200--Hb_033152_110 Hb_003226_200--Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_000057_130--Hb_000861_100 Hb_000057_130--Hb_003371_070 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_000622_060--Hb_000115_360 Hb_000130_200 Hb_000130_200 Hb_000622_060--Hb_000130_200 Hb_000622_060--Hb_033152_110 Hb_000032_600 Hb_000032_600 Hb_000622_060--Hb_000032_600 Hb_000622_060--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0368243 1.4131 2.03873 3.52389 0 0.198111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78787 1.20465 0.713455 1.93653 4.08427

CAGE analysis