Hb_010672_040

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig10672: 25622-26539
Sequence    

Annotation

kegg
ID rcu:RCOM_0082580
description geranyl geranyl pyrophosphate synthase, putative (EC:2.5.1.29)
nr
ID BAF98300.1
description geranyl-diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q39108
description Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
trembl
ID A9ZN18
description Geranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGPS PE=2 SV=1
Gene Ontology
ID GO:0004161
description heterodimeric geranylgeranyl pyrophosphate synthase small chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02080: 25483-25623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010672_040 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
2 Hb_124302_010 0.1112097801 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
3 Hb_003147_020 0.1280335657 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
4 Hb_002534_040 0.1328754862 - - Calmodulin, putative [Ricinus communis]
5 Hb_032223_010 0.144813212 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_000165_270 0.1462896073 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
7 Hb_001433_120 0.1470321245 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
8 Hb_007632_200 0.147952157 - - hypothetical protein L484_018221 [Morus notabilis]
9 Hb_000206_080 0.1564461362 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
10 Hb_136620_010 0.1569001305 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
11 Hb_003411_080 0.1646427111 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005854_060 0.1646866262 - - short-chain dehydrogenase, putative [Ricinus communis]
13 Hb_002028_230 0.1694444618 - - Pectinesterase-3 precursor, putative [Ricinus communis]
14 Hb_001102_030 0.171094993 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000984_230 0.1725250154 - - -
16 Hb_000175_210 0.1732922782 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
17 Hb_007157_050 0.1739353442 - - hypothetical protein RCOM_0711500 [Ricinus communis]
18 Hb_007218_010 0.173999667 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
19 Hb_001680_060 0.1757313718 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021622_010 0.1770606722 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]

Gene co-expression network

sample Hb_010672_040 Hb_010672_040 Hb_124302_010 Hb_124302_010 Hb_010672_040--Hb_124302_010 Hb_003147_020 Hb_003147_020 Hb_010672_040--Hb_003147_020 Hb_002534_040 Hb_002534_040 Hb_010672_040--Hb_002534_040 Hb_032223_010 Hb_032223_010 Hb_010672_040--Hb_032223_010 Hb_000165_270 Hb_000165_270 Hb_010672_040--Hb_000165_270 Hb_001433_120 Hb_001433_120 Hb_010672_040--Hb_001433_120 Hb_124302_010--Hb_032223_010 Hb_008725_110 Hb_008725_110 Hb_124302_010--Hb_008725_110 Hb_124302_010--Hb_003147_020 Hb_000175_210 Hb_000175_210 Hb_124302_010--Hb_000175_210 Hb_000984_230 Hb_000984_230 Hb_124302_010--Hb_000984_230 Hb_003411_080 Hb_003411_080 Hb_003147_020--Hb_003411_080 Hb_149407_010 Hb_149407_010 Hb_003147_020--Hb_149407_010 Hb_002028_230 Hb_002028_230 Hb_003147_020--Hb_002028_230 Hb_162008_030 Hb_162008_030 Hb_003147_020--Hb_162008_030 Hb_029879_040 Hb_029879_040 Hb_003147_020--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_003147_020--Hb_000129_060 Hb_000668_190 Hb_000668_190 Hb_002534_040--Hb_000668_190 Hb_000340_070 Hb_000340_070 Hb_002534_040--Hb_000340_070 Hb_000413_220 Hb_000413_220 Hb_002534_040--Hb_000413_220 Hb_002435_010 Hb_002435_010 Hb_002534_040--Hb_002435_010 Hb_004724_250 Hb_004724_250 Hb_002534_040--Hb_004724_250 Hb_012573_060 Hb_012573_060 Hb_032223_010--Hb_012573_060 Hb_000680_080 Hb_000680_080 Hb_032223_010--Hb_000680_080 Hb_022929_010 Hb_022929_010 Hb_032223_010--Hb_022929_010 Hb_002030_140 Hb_002030_140 Hb_032223_010--Hb_002030_140 Hb_014109_030 Hb_014109_030 Hb_032223_010--Hb_014109_030 Hb_001546_100 Hb_001546_100 Hb_032223_010--Hb_001546_100 Hb_000165_270--Hb_001433_120 Hb_007218_010 Hb_007218_010 Hb_000165_270--Hb_007218_010 Hb_007157_050 Hb_007157_050 Hb_000165_270--Hb_007157_050 Hb_000347_160 Hb_000347_160 Hb_000165_270--Hb_000347_160 Hb_005854_060 Hb_005854_060 Hb_000165_270--Hb_005854_060 Hb_001433_120--Hb_007218_010 Hb_001433_120--Hb_005854_060 Hb_001433_120--Hb_007157_050 Hb_001680_060 Hb_001680_060 Hb_001433_120--Hb_001680_060 Hb_002447_060 Hb_002447_060 Hb_001433_120--Hb_002447_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0205481 0.776232 0.0397196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0357787 0

CAGE analysis