Hb_010672_070

Information

Type -
Description -
Location Contig10672: 49925-51478
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019708mg
description hypothetical protein
nr
ID AFW61047.1
description hypothetical protein ZEAMMB73_607937, partial [Zea mays]
swissprot
ID -
description -
trembl
ID K7U0N4
description Autophagy-related protein (Fragment) OS=Zea mays GN=ZEAMMB73_607937 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02087: 48727-51773 , PASA_asmbl_02088: 49427-49778
cDNA
(Sanger)
(ID:Location)		 011_A01.ab1: 48814-51718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010672_070 0.0 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
2 Hb_076626_010 0.0473753946 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005590_020 0.0484439809 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
4 Hb_002999_050 0.0701513834 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
5 Hb_003455_040 0.0706983126 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
6 Hb_003203_040 0.0738098752 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
7 Hb_000933_160 0.0747244231 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
8 Hb_003893_050 0.0752033066 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
9 Hb_001300_040 0.078844492 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
10 Hb_003994_040 0.0845764481 - - -
11 Hb_002431_050 0.0867550458 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
12 Hb_009851_100 0.0868845459 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
13 Hb_001141_030 0.0892130729 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
14 Hb_001158_230 0.0895252067 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
15 Hb_000029_200 0.0897763232 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
16 Hb_010672_060 0.0909608099 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_005511_160 0.0928998766 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
18 Hb_002259_070 0.0931558702 - - taz protein, putative [Ricinus communis]
19 Hb_000283_110 0.0931958811 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
20 Hb_002687_170 0.0932967477 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_010672_070 Hb_010672_070 Hb_076626_010 Hb_076626_010 Hb_010672_070--Hb_076626_010 Hb_005590_020 Hb_005590_020 Hb_010672_070--Hb_005590_020 Hb_002999_050 Hb_002999_050 Hb_010672_070--Hb_002999_050 Hb_003455_040 Hb_003455_040 Hb_010672_070--Hb_003455_040 Hb_003203_040 Hb_003203_040 Hb_010672_070--Hb_003203_040 Hb_000933_160 Hb_000933_160 Hb_010672_070--Hb_000933_160 Hb_076626_010--Hb_005590_020 Hb_076626_010--Hb_002999_050 Hb_076626_010--Hb_000933_160 Hb_001158_230 Hb_001158_230 Hb_076626_010--Hb_001158_230 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260 Hb_003579_030 Hb_003579_030 Hb_002999_050--Hb_003579_030 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_001141_030 Hb_001141_030 Hb_003203_040--Hb_001141_030 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_003203_040--Hb_003893_050 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_005063_050 Hb_005063_050 Hb_003203_040--Hb_005063_050 Hb_000933_160--Hb_001158_230 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_002687_170 Hb_002687_170 Hb_000933_160--Hb_002687_170 Hb_000933_160--Hb_002999_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2641 6.11294 15.0188 16.6312 31.1557 34.6354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.0421 116.703 55.7803 14.7066 18.9396

CAGE analysis