Hb_010680_010

Information

Type -
Description -
Location Contig10680: 10686-19819
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010680_010 0.0 - - -
2 Hb_142392_010 0.1848251848 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
3 Hb_001158_030 0.1879026231 - - -
4 Hb_015456_020 0.1974042093 - - -
5 Hb_004374_060 0.2166533881 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
6 Hb_145761_010 0.2167183938 - - -
7 Hb_005214_110 0.2177091239 - - -
8 Hb_116195_010 0.2288347966 - - -
9 Hb_027556_010 0.2292155098 - - -
10 Hb_004374_050 0.2309602565 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002045_270 0.2314150905 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
12 Hb_000300_380 0.2356729809 - - -
13 Hb_030619_010 0.2421956748 - - -
14 Hb_000221_100 0.2445407654 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
15 Hb_011360_010 0.2455127233 - - PREDICTED: uncharacterized protein LOC104216696 [Nicotiana sylvestris]
16 Hb_080083_010 0.2474721073 - - -
17 Hb_005298_030 0.2477135469 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
18 Hb_002918_280 0.2496689913 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
19 Hb_018133_120 0.2505035901 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
20 Hb_005031_070 0.2523444623 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_010680_010 Hb_010680_010 Hb_142392_010 Hb_142392_010 Hb_010680_010--Hb_142392_010 Hb_001158_030 Hb_001158_030 Hb_010680_010--Hb_001158_030 Hb_015456_020 Hb_015456_020 Hb_010680_010--Hb_015456_020 Hb_004374_060 Hb_004374_060 Hb_010680_010--Hb_004374_060 Hb_145761_010 Hb_145761_010 Hb_010680_010--Hb_145761_010 Hb_005214_110 Hb_005214_110 Hb_010680_010--Hb_005214_110 Hb_116195_010 Hb_116195_010 Hb_142392_010--Hb_116195_010 Hb_001265_010 Hb_001265_010 Hb_142392_010--Hb_001265_010 Hb_080083_010 Hb_080083_010 Hb_142392_010--Hb_080083_010 Hb_142392_010--Hb_145761_010 Hb_000088_060 Hb_000088_060 Hb_142392_010--Hb_000088_060 Hb_027556_010 Hb_027556_010 Hb_001158_030--Hb_027556_010 Hb_001186_060 Hb_001186_060 Hb_001158_030--Hb_001186_060 Hb_011716_040 Hb_011716_040 Hb_001158_030--Hb_011716_040 Hb_001930_070 Hb_001930_070 Hb_001158_030--Hb_001930_070 Hb_001158_030--Hb_005214_110 Hb_001158_030--Hb_015456_020 Hb_000300_380 Hb_000300_380 Hb_015456_020--Hb_000300_380 Hb_005333_040 Hb_005333_040 Hb_015456_020--Hb_005333_040 Hb_004204_190 Hb_004204_190 Hb_015456_020--Hb_004204_190 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_000014_100 Hb_000014_100 Hb_015456_020--Hb_000014_100 Hb_004374_060--Hb_004204_190 Hb_004374_060--Hb_015456_020 Hb_004374_060--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_004374_060--Hb_004374_050 Hb_004032_240 Hb_004032_240 Hb_004374_060--Hb_004032_240 Hb_000221_100 Hb_000221_100 Hb_145761_010--Hb_000221_100 Hb_000680_150 Hb_000680_150 Hb_145761_010--Hb_000680_150 Hb_003777_070 Hb_003777_070 Hb_145761_010--Hb_003777_070 Hb_002918_280 Hb_002918_280 Hb_145761_010--Hb_002918_280 Hb_000977_140 Hb_000977_140 Hb_145761_010--Hb_000977_140 Hb_145761_010--Hb_000183_070 Hb_007245_090 Hb_007245_090 Hb_005214_110--Hb_007245_090 Hb_005214_110--Hb_001930_070 Hb_000339_070 Hb_000339_070 Hb_005214_110--Hb_000339_070 Hb_005214_110--Hb_000014_100 Hb_005214_110--Hb_001186_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55554 0.997209 0 0.0418723 3.69638 0.461615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40552 2.12687 0.413619 0.0645897 0

CAGE analysis