Hb_010683_030

Information

Type -
Description -
Location Contig10683: 17744-26235
Sequence    

Annotation

kegg
ID rcu:RCOM_0868260
description hypothetical protein
nr
ID XP_002519961.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0868260 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna (cytosine-5)-methyltransferase cmt2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02099: 17407-26195 , PASA_asmbl_02100: 25633-25847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010683_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010863_030 0.1184708662 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
3 Hb_004447_050 0.1215319936 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
4 Hb_018133_070 0.1238707805 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
5 Hb_000032_360 0.1405554243 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
6 Hb_005000_010 0.1418402706 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
7 Hb_004705_070 0.1451535333 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
8 Hb_000320_310 0.1461482427 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
9 Hb_001221_060 0.1465329014 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
10 Hb_000227_400 0.1483310573 - - lipoxygenase, putative [Ricinus communis]
11 Hb_006133_020 0.1506579084 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
12 Hb_001517_070 0.1512051247 - - protein with unknown function [Ricinus communis]
13 Hb_004218_200 0.1550157536 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_126933_020 0.1561574665 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
15 Hb_000925_150 0.1580086755 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
16 Hb_003581_230 0.1611442277 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
17 Hb_001141_350 0.1633652077 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
18 Hb_000083_080 0.1640331115 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
19 Hb_000061_430 0.1658124421 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000130_130 0.166572279 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]

Gene co-expression network

sample Hb_010683_030 Hb_010683_030 Hb_010863_030 Hb_010863_030 Hb_010683_030--Hb_010863_030 Hb_004447_050 Hb_004447_050 Hb_010683_030--Hb_004447_050 Hb_018133_070 Hb_018133_070 Hb_010683_030--Hb_018133_070 Hb_000032_360 Hb_000032_360 Hb_010683_030--Hb_000032_360 Hb_005000_010 Hb_005000_010 Hb_010683_030--Hb_005000_010 Hb_004705_070 Hb_004705_070 Hb_010683_030--Hb_004705_070 Hb_000320_310 Hb_000320_310 Hb_010863_030--Hb_000320_310 Hb_010863_030--Hb_005000_010 Hb_002897_010 Hb_002897_010 Hb_010863_030--Hb_002897_010 Hb_010683_070 Hb_010683_070 Hb_010863_030--Hb_010683_070 Hb_001536_020 Hb_001536_020 Hb_010863_030--Hb_001536_020 Hb_004447_050--Hb_000032_360 Hb_001141_350 Hb_001141_350 Hb_004447_050--Hb_001141_350 Hb_007479_010 Hb_007479_010 Hb_004447_050--Hb_007479_010 Hb_004855_070 Hb_004855_070 Hb_004447_050--Hb_004855_070 Hb_000130_130 Hb_000130_130 Hb_004447_050--Hb_000130_130 Hb_006133_020 Hb_006133_020 Hb_018133_070--Hb_006133_020 Hb_018133_070--Hb_000032_360 Hb_000925_150 Hb_000925_150 Hb_018133_070--Hb_000925_150 Hb_003020_190 Hb_003020_190 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010 Hb_000032_360--Hb_000130_130 Hb_003581_230 Hb_003581_230 Hb_000032_360--Hb_003581_230 Hb_000032_360--Hb_001141_350 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_005000_010--Hb_000320_310 Hb_004330_020 Hb_004330_020 Hb_005000_010--Hb_004330_020 Hb_000274_050 Hb_000274_050 Hb_005000_010--Hb_000274_050 Hb_004218_200 Hb_004218_200 Hb_005000_010--Hb_004218_200 Hb_002876_200 Hb_002876_200 Hb_005000_010--Hb_002876_200 Hb_150651_020 Hb_150651_020 Hb_004705_070--Hb_150651_020 Hb_001597_020 Hb_001597_020 Hb_004705_070--Hb_001597_020 Hb_050847_040 Hb_050847_040 Hb_004705_070--Hb_050847_040 Hb_126933_020 Hb_126933_020 Hb_004705_070--Hb_126933_020 Hb_003894_060 Hb_003894_060 Hb_004705_070--Hb_003894_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.884742 0.971432 9.00599 5.56417 0.442051 0.845762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161169 0 0 0.824725 4.88819

CAGE analysis