Hb_010710_010

Information

Type -
Description -
Location Contig10710: 5573-12497
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25020g
description POPTRDRAFT_752121; pumilio/Puf RNA-binding domain-containing family protein
nr
ID XP_002299859.2
description pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
swissprot
ID Q9ZW07
description Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
trembl
ID B9GJ97
description Pumilio/Puf RNA-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0001s25020g PE=4 SV=2
Gene Ontology
ID GO:0003723
description pumilio puf rna-binding domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02245: 5740-12459 , PASA_asmbl_02246: 7109-12459 , PASA_asmbl_02247: 11794-11970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_010 0.0 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
2 Hb_000230_080 0.055149239 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
3 Hb_000413_180 0.0637661661 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_003750_080 0.0722325895 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
5 Hb_002307_100 0.0793271452 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_000152_820 0.0818775439 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
7 Hb_001720_050 0.0822772758 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
8 Hb_000386_030 0.0832296781 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
9 Hb_002039_010 0.0855496612 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_000358_080 0.0860552891 - - Ribonuclease 3 [Gossypium arboreum]
11 Hb_002890_340 0.0868907142 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
12 Hb_010175_020 0.0880784472 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000207_390 0.0883194311 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
14 Hb_000953_010 0.088499764 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
15 Hb_007757_110 0.0885870235 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_002154_030 0.088687027 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000086_590 0.0900199266 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
18 Hb_000173_400 0.0906093486 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
19 Hb_003581_140 0.0906999379 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
20 Hb_000803_190 0.0911643975 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010710_010 Hb_010710_010 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_000413_180 Hb_000413_180 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000230_080--Hb_000413_180 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_000230_080--Hb_003750_080 Hb_010175_020 Hb_010175_020 Hb_000413_180--Hb_010175_020 Hb_000413_180--Hb_003750_080 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_175338_030 Hb_175338_030 Hb_002307_100--Hb_175338_030 Hb_002477_160 Hb_002477_160 Hb_002307_100--Hb_002477_160 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_000152_820--Hb_010175_020 Hb_000317_020 Hb_000317_020 Hb_000152_820--Hb_000317_020 Hb_000152_820--Hb_007757_110 Hb_001736_040 Hb_001736_040 Hb_000152_820--Hb_001736_040 Hb_000776_110 Hb_000776_110 Hb_000152_820--Hb_000776_110 Hb_001269_550 Hb_001269_550 Hb_000152_820--Hb_001269_550 Hb_003777_330 Hb_003777_330 Hb_001720_050--Hb_003777_330 Hb_000421_260 Hb_000421_260 Hb_001720_050--Hb_000421_260 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_002890_340 Hb_002890_340 Hb_001720_050--Hb_002890_340 Hb_001720_050--Hb_000152_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.3947 40.5364 10.0111 13.6517 74.5769 91.146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.9173 35.7442 84.5941 35.5694 15.3188

CAGE analysis