Hb_010710_020

Information

Type -
Description -
Location Contig10710: 13251-14133
Sequence    

Annotation

kegg
ID pmum:103322096
description uncharacterized LOC103322096
nr
ID XP_008222200.1
description PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5W0N0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012831mg PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC103322096

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02249: 13249-13826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_020 0.0 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
2 Hb_001538_100 0.1007829257 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
3 Hb_003680_070 0.1120267236 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
4 Hb_001153_080 0.1189773704 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
5 Hb_000163_200 0.1215742882 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
6 Hb_000261_460 0.1223999094 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
7 Hb_030565_070 0.1239224667 - - -
8 Hb_002540_030 0.1241157672 - - hypothetical protein 32 [Hevea brasiliensis]
9 Hb_000045_190 0.1264335965 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
10 Hb_005618_040 0.1298579081 - - -
11 Hb_000922_270 0.1312298895 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
12 Hb_001341_130 0.1314167814 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003086_100 0.136282765 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
14 Hb_000051_040 0.1364331333 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
15 Hb_000188_130 0.1367348201 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
16 Hb_000333_090 0.1376533326 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
17 Hb_002471_160 0.1411002024 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
18 Hb_002781_020 0.1421488751 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
19 Hb_001999_120 0.1431671835 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
20 Hb_010172_070 0.1432977023 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010710_020 Hb_010710_020 Hb_001538_100 Hb_001538_100 Hb_010710_020--Hb_001538_100 Hb_003680_070 Hb_003680_070 Hb_010710_020--Hb_003680_070 Hb_001153_080 Hb_001153_080 Hb_010710_020--Hb_001153_080 Hb_000163_200 Hb_000163_200 Hb_010710_020--Hb_000163_200 Hb_000261_460 Hb_000261_460 Hb_010710_020--Hb_000261_460 Hb_030565_070 Hb_030565_070 Hb_010710_020--Hb_030565_070 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_002540_030 Hb_002540_030 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010 Hb_003680_070--Hb_000261_460 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_002781_020 Hb_002781_020 Hb_003680_070--Hb_002781_020 Hb_001754_010 Hb_001754_010 Hb_003680_070--Hb_001754_010 Hb_000045_190 Hb_000045_190 Hb_001153_080--Hb_000045_190 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001341_130 Hb_001341_130 Hb_001153_080--Hb_001341_130 Hb_000634_050 Hb_000634_050 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_000188_130 Hb_000188_130 Hb_001153_080--Hb_000188_130 Hb_004242_080 Hb_004242_080 Hb_000163_200--Hb_004242_080 Hb_004607_140 Hb_004607_140 Hb_000163_200--Hb_004607_140 Hb_001951_110 Hb_001951_110 Hb_000163_200--Hb_001951_110 Hb_157854_010 Hb_157854_010 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_000051_040 Hb_000051_040 Hb_000261_460--Hb_000051_040 Hb_007021_020 Hb_007021_020 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_030565_070--Hb_000163_200 Hb_000107_370 Hb_000107_370 Hb_030565_070--Hb_000107_370 Hb_030565_070--Hb_001153_080 Hb_001722_040 Hb_001722_040 Hb_030565_070--Hb_001722_040 Hb_030565_070--Hb_005618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0009 8.24247 4.77852 2.72166 17.3812 20.8148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.5121 53.9913 24.9219 23.1099 3.23546

CAGE analysis