Hb_010710_030

Information

Type transcription factor
Description TF Family: G2-like
Location Contig10710: 22418-23431
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03990g
description POPTRDRAFT_203640; hypothetical protein
nr
ID XP_012066973.1
description PREDICTED: transcription factor LUX [Jatropha curcas]
swissprot
ID Q9SNB4
description Transcription factor LUX OS=Arabidopsis thaliana GN=LUX PE=1 SV=1
trembl
ID A0A067L1F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02952 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor lux

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02250: 22341-22543 , PASA_asmbl_02251: 23169-25269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_030 0.0 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
2 Hb_000115_060 0.0649581525 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
3 Hb_008066_010 0.0802229771 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
4 Hb_004223_130 0.0921831755 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002681_110 0.0971550311 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
6 Hb_000696_110 0.097164522 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_001671_080 0.0978636826 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_000152_140 0.1003454361 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
9 Hb_000221_270 0.1040874289 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
10 Hb_000029_030 0.1043524372 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_000051_110 0.1049969714 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001604_010 0.1053688712 - - 14-3-3 protein, putative [Ricinus communis]
13 Hb_000300_620 0.1060728847 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
14 Hb_003052_100 0.1090258048 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000110_160 0.109679879 - - conserved hypothetical protein [Ricinus communis]
16 Hb_158092_070 0.1102803944 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
17 Hb_002686_270 0.1106818612 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001981_090 0.1111026075 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
19 Hb_000665_040 0.1118879858 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
20 Hb_002357_040 0.1119131644 - - latex-abundant protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_010710_030 Hb_010710_030 Hb_000115_060 Hb_000115_060 Hb_010710_030--Hb_000115_060 Hb_008066_010 Hb_008066_010 Hb_010710_030--Hb_008066_010 Hb_004223_130 Hb_004223_130 Hb_010710_030--Hb_004223_130 Hb_002681_110 Hb_002681_110 Hb_010710_030--Hb_002681_110 Hb_000696_110 Hb_000696_110 Hb_010710_030--Hb_000696_110 Hb_001671_080 Hb_001671_080 Hb_010710_030--Hb_001671_080 Hb_000115_060--Hb_008066_010 Hb_000115_060--Hb_002681_110 Hb_000840_210 Hb_000840_210 Hb_000115_060--Hb_000840_210 Hb_001329_300 Hb_001329_300 Hb_000115_060--Hb_001329_300 Hb_183086_060 Hb_183086_060 Hb_000115_060--Hb_183086_060 Hb_000110_160 Hb_000110_160 Hb_008066_010--Hb_000110_160 Hb_008066_010--Hb_001329_300 Hb_000069_460 Hb_000069_460 Hb_008066_010--Hb_000069_460 Hb_000221_270 Hb_000221_270 Hb_008066_010--Hb_000221_270 Hb_000567_260 Hb_000567_260 Hb_008066_010--Hb_000567_260 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_158092_070 Hb_158092_070 Hb_004223_130--Hb_158092_070 Hb_004223_130--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_004223_130--Hb_001030_120 Hb_002272_250 Hb_002272_250 Hb_004223_130--Hb_002272_250 Hb_000029_030 Hb_000029_030 Hb_002681_110--Hb_000029_030 Hb_157022_020 Hb_157022_020 Hb_002681_110--Hb_157022_020 Hb_071736_020 Hb_071736_020 Hb_002681_110--Hb_071736_020 Hb_000317_030 Hb_000317_030 Hb_002681_110--Hb_000317_030 Hb_007919_050 Hb_007919_050 Hb_002681_110--Hb_007919_050 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_003052_100 Hb_003052_100 Hb_001671_080--Hb_003052_100 Hb_001671_080--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_001671_080--Hb_000975_290 Hb_007908_020 Hb_007908_020 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.48107 0.860482 0.690134 1.2044 4.02797 4.81459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.52481 2.78136 6.06234 2.74023 0.481319

CAGE analysis