Hb_010710_070

Information

Type -
Description -
Location Contig10710: 38706-45165
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12500g
description POPTRDRAFT_1066343; outer membrane family protein
nr
ID XP_011004307.1
description PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
swissprot
ID Q9STE8
description Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1
trembl
ID B9GMY2
description Outer membrane family protein OS=Populus trichocarpa GN=POPTR_0001s12500g PE=4 SV=1
Gene Ontology
ID GO:0005774
description protein toc75- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02257: 38710-44870 , PASA_asmbl_02258: 40030-40630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_070 0.0 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
2 Hb_004963_030 0.0492995599 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_028912_050 0.0550107595 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
4 Hb_188063_020 0.0569727501 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004994_380 0.0576055766 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
6 Hb_002849_100 0.0578911981 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
7 Hb_001442_040 0.0714087275 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
8 Hb_004225_050 0.0715910877 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_001014_160 0.0729654879 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
10 Hb_000005_190 0.0745892475 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
11 Hb_007317_140 0.0756966805 - - expressed protein, putative [Ricinus communis]
12 Hb_002095_010 0.0762878328 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
13 Hb_001141_020 0.0774388333 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
14 Hb_000076_130 0.0792608357 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
15 Hb_000261_060 0.0812666836 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
16 Hb_000028_480 0.0820981572 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
17 Hb_003544_140 0.0833811926 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
18 Hb_001008_120 0.0847840641 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
19 Hb_000034_040 0.0872011767 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
20 Hb_172632_080 0.0882727271 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_010710_070 Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_010710_070--Hb_004963_030 Hb_028912_050 Hb_028912_050 Hb_010710_070--Hb_028912_050 Hb_188063_020 Hb_188063_020 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_001442_040 Hb_001442_040 Hb_010710_070--Hb_001442_040 Hb_004963_030--Hb_001442_040 Hb_004963_030--Hb_188063_020 Hb_001014_160 Hb_001014_160 Hb_004963_030--Hb_001014_160 Hb_004963_030--Hb_028912_050 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250 Hb_004225_050 Hb_004225_050 Hb_028912_050--Hb_004225_050 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_188063_020--Hb_004225_050 Hb_188063_020--Hb_002849_100 Hb_009548_020 Hb_009548_020 Hb_188063_020--Hb_009548_020 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_004994_380--Hb_001014_160 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004994_380--Hb_004963_030 Hb_002849_100--Hb_004963_030 Hb_002849_100--Hb_004225_050 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_003847_130 Hb_003847_130 Hb_001442_040--Hb_003847_130 Hb_012733_030 Hb_012733_030 Hb_001442_040--Hb_012733_030 Hb_002592_060 Hb_002592_060 Hb_001442_040--Hb_002592_060 Hb_001301_100 Hb_001301_100 Hb_001442_040--Hb_001301_100 Hb_001442_040--Hb_001014_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6119 20.4766 21.4105 19.8352 34.1089 47.4326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4208 22.6236 32.3052 30.1237 48.707

CAGE analysis