Hb_010712_020

Information

Type -
Description -
Location Contig10712: 5977-13218
Sequence    

Annotation

kegg
ID vvi:100260649
description caffeic acid 3-O-methyltransferase-like
nr
ID XP_012068744.1
description PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID A0A067L020
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24587 PE=4 SV=1
Gene Ontology
ID GO:0008171
description caffeic acid 3-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02264: 7305-7438 , PASA_asmbl_02265: 7485-7729
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010712_020 0.0 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
2 Hb_011824_010 0.0424341168 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
3 Hb_001863_290 0.0586801448 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
4 Hb_001141_170 0.0630591312 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
5 Hb_000160_230 0.0665324294 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
6 Hb_007810_140 0.0703547547 - - Ankyrin repeat-containing protein [Medicago truncatula]
7 Hb_064398_010 0.0704401868 - - cytochrome P450, putative [Ricinus communis]
8 Hb_107258_010 0.0727045007 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
9 Hb_139460_010 0.0750541817 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
10 Hb_000859_040 0.0755239213 - - Early nodulin 16 precursor, putative [Ricinus communis]
11 Hb_016172_010 0.0768423512 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
12 Hb_002615_050 0.0786105508 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_004564_010 0.0821826472 - - receptor-kinase, putative [Ricinus communis]
14 Hb_001442_080 0.0825616524 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
15 Hb_146023_010 0.0834402366 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_011856_010 0.0854686102 - - cytochrome P450, putative [Ricinus communis]
17 Hb_012019_030 0.0913476821 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
18 Hb_004195_040 0.0918811349 - - salicylic acid methyl transferase [Capsicum annuum]
19 Hb_002758_040 0.0930739363 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001047_250 0.0941021257 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_010712_020 Hb_010712_020 Hb_011824_010 Hb_011824_010 Hb_010712_020--Hb_011824_010 Hb_001863_290 Hb_001863_290 Hb_010712_020--Hb_001863_290 Hb_001141_170 Hb_001141_170 Hb_010712_020--Hb_001141_170 Hb_000160_230 Hb_000160_230 Hb_010712_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_010712_020--Hb_007810_140 Hb_064398_010 Hb_064398_010 Hb_010712_020--Hb_064398_010 Hb_139460_010 Hb_139460_010 Hb_011824_010--Hb_139460_010 Hb_011824_010--Hb_001863_290 Hb_107258_010 Hb_107258_010 Hb_011824_010--Hb_107258_010 Hb_011856_010 Hb_011856_010 Hb_011824_010--Hb_011856_010 Hb_002615_050 Hb_002615_050 Hb_011824_010--Hb_002615_050 Hb_001863_290--Hb_107258_010 Hb_001442_080 Hb_001442_080 Hb_001863_290--Hb_001442_080 Hb_004564_010 Hb_004564_010 Hb_001863_290--Hb_004564_010 Hb_001863_290--Hb_064398_010 Hb_012019_030 Hb_012019_030 Hb_001141_170--Hb_012019_030 Hb_001114_300 Hb_001114_300 Hb_001141_170--Hb_001114_300 Hb_004195_040 Hb_004195_040 Hb_001141_170--Hb_004195_040 Hb_000859_040 Hb_000859_040 Hb_001141_170--Hb_000859_040 Hb_001141_170--Hb_011824_010 Hb_000160_230--Hb_007810_140 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000160_230--Hb_006196_020 Hb_000160_230--Hb_011824_010 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_006196_020 Hb_007810_140--Hb_011824_010 Hb_007810_140--Hb_139460_010 Hb_064398_010--Hb_001442_080 Hb_000487_170 Hb_000487_170 Hb_064398_010--Hb_000487_170 Hb_064398_010--Hb_001141_170 Hb_064398_010--Hb_107258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0163016 5.72676 0.248213 0.927579 0 0.0322777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0496475 33.6423 0.221454

CAGE analysis