Hb_010712_050

Information

Type -
Description -
Location Contig10712: 20458-21699
Sequence    

Annotation

kegg
ID rcu:RCOM_0621510
description protein with unknown function
nr
ID XP_012068739.1
description PREDICTED: protein ELC-like [Jatropha curcas]
swissprot
ID Q9LHG8
description Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1
trembl
ID A0A067L012
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24582 PE=4 SV=1
Gene Ontology
ID GO:0006464
description protein elc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02276: 20706-21890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010712_050 0.0 - - PREDICTED: protein ELC-like [Jatropha curcas]
2 Hb_003030_060 0.0527195588 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
3 Hb_012194_030 0.0570672405 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_000329_370 0.0599602026 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
5 Hb_002234_090 0.0612408097 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_001614_060 0.0613784987 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
7 Hb_003835_070 0.0650141298 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
8 Hb_001488_180 0.0695594211 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
9 Hb_002798_070 0.0717131033 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_001004_060 0.0744012927 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_002218_090 0.0750244616 - - Poly(rC)-binding protein, putative [Ricinus communis]
12 Hb_003768_050 0.0761341232 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
13 Hb_003464_090 0.0764533377 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
14 Hb_005489_020 0.0765276568 - - conserved hypothetical protein [Ricinus communis]
15 Hb_162275_050 0.0766549899 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
16 Hb_002085_030 0.0775658355 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
17 Hb_001080_230 0.0779476942 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
18 Hb_009150_020 0.0781692191 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
19 Hb_001279_120 0.0786252721 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
20 Hb_004916_010 0.0789467458 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]

Gene co-expression network

sample Hb_010712_050 Hb_010712_050 Hb_003030_060 Hb_003030_060 Hb_010712_050--Hb_003030_060 Hb_012194_030 Hb_012194_030 Hb_010712_050--Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_010712_050--Hb_000329_370 Hb_002234_090 Hb_002234_090 Hb_010712_050--Hb_002234_090 Hb_001614_060 Hb_001614_060 Hb_010712_050--Hb_001614_060 Hb_003835_070 Hb_003835_070 Hb_010712_050--Hb_003835_070 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_003030_060--Hb_004837_180 Hb_001080_230 Hb_001080_230 Hb_003030_060--Hb_001080_230 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_003030_060--Hb_012194_030 Hb_012194_030--Hb_000329_370 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_002085_030 Hb_002085_030 Hb_012194_030--Hb_002085_030 Hb_012194_030--Hb_003835_070 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090 Hb_005489_020 Hb_005489_020 Hb_000329_370--Hb_005489_020 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_004916_010 Hb_004916_010 Hb_002234_090--Hb_004916_010 Hb_002234_090--Hb_003835_070 Hb_003768_050 Hb_003768_050 Hb_002234_090--Hb_003768_050 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_001266_100 Hb_001266_100 Hb_001614_060--Hb_001266_100 Hb_001614_060--Hb_003768_050 Hb_001614_060--Hb_001080_230 Hb_001614_060--Hb_003030_060 Hb_000025_280 Hb_000025_280 Hb_001614_060--Hb_000025_280 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5881 22.8308 13.0142 9.15896 11.1683 12.3768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0324 11.6399 14.0419 15.7333 17.3389

CAGE analysis