Hb_010712_090

Information

Type -
Description -
Location Contig10712: 48792-50696
Sequence    

Annotation

kegg
ID rcu:RCOM_0621450
description hypothetical protein
nr
ID XP_012068736.1
description PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24578 PE=4 SV=1
Gene Ontology
ID GO:0005515
description PREDICTED: uncharacterized protein LOC105631276

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02282: 48447-52184
cDNA
(Sanger)
(ID:Location)		 014_M13.ab1: 50181-52181

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010712_090 0.0 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
2 Hb_001033_050 0.0682692685 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
3 Hb_000236_410 0.0708738934 - - Paramyosin, putative [Ricinus communis]
4 Hb_008253_020 0.0716292921 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
5 Hb_002284_170 0.0754975122 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
6 Hb_008103_060 0.0761172369 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
7 Hb_000862_040 0.0777490518 - - ara4-interacting protein, putative [Ricinus communis]
8 Hb_000402_230 0.0781590723 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
9 Hb_002006_040 0.0782559662 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
10 Hb_000768_180 0.0795002815 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
11 Hb_004129_070 0.0803394975 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
12 Hb_001054_030 0.0804755045 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
13 Hb_004410_070 0.0818495343 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
14 Hb_002542_130 0.0818703299 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
15 Hb_004785_030 0.0822861703 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
16 Hb_000260_640 0.0825309003 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_000069_130 0.0825758762 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
18 Hb_000700_060 0.083082075 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
19 Hb_001935_140 0.0835077819 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
20 Hb_000176_100 0.0843444593 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_010712_090 Hb_010712_090 Hb_001033_050 Hb_001033_050 Hb_010712_090--Hb_001033_050 Hb_000236_410 Hb_000236_410 Hb_010712_090--Hb_000236_410 Hb_008253_020 Hb_008253_020 Hb_010712_090--Hb_008253_020 Hb_002284_170 Hb_002284_170 Hb_010712_090--Hb_002284_170 Hb_008103_060 Hb_008103_060 Hb_010712_090--Hb_008103_060 Hb_000862_040 Hb_000862_040 Hb_010712_090--Hb_000862_040 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_001033_050--Hb_008253_020 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_008253_020--Hb_004129_070 Hb_000402_230 Hb_000402_230 Hb_008253_020--Hb_000402_230 Hb_007810_110 Hb_007810_110 Hb_008253_020--Hb_007810_110 Hb_002276_240 Hb_002276_240 Hb_008253_020--Hb_002276_240 Hb_001089_050 Hb_001089_050 Hb_008253_020--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_008253_020--Hb_000009_500 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002092_070 Hb_002092_070 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_000070_080 Hb_000070_080 Hb_008103_060--Hb_000070_080 Hb_140049_040 Hb_140049_040 Hb_008103_060--Hb_140049_040 Hb_007635_030 Hb_007635_030 Hb_008103_060--Hb_007635_030 Hb_004195_200 Hb_004195_200 Hb_008103_060--Hb_004195_200 Hb_002876_130 Hb_002876_130 Hb_008103_060--Hb_002876_130 Hb_002043_140 Hb_002043_140 Hb_008103_060--Hb_002043_140 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2533 37.1754 12.5211 19.8052 23.3386 18.3664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00535 10.797 10.7914 17.1306 12.3811

CAGE analysis