Hb_010727_010

Information

Type -
Description -
Location Contig10727: 4471-8239
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03620g
description POPTRDRAFT_568366; hypothetical protein
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rks1 isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010727_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_001183_010 0.1279627033 - - -
3 Hb_000025_340 0.1412545844 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
4 Hb_081745_010 0.1459531689 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
5 Hb_141918_010 0.159729207 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
6 Hb_000087_050 0.1628670941 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
7 Hb_002272_080 0.1667769142 - - -
8 Hb_000227_060 0.1683375997 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
9 Hb_000905_170 0.1685788506 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
10 Hb_002400_400 0.1726087024 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
11 Hb_000016_100 0.1732038152 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
12 Hb_000592_090 0.1740413035 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
13 Hb_145979_010 0.1745728031 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
14 Hb_006588_150 0.1748981834 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
15 Hb_005375_040 0.1863146379 - - dicer-1, putative [Ricinus communis]
16 Hb_073395_010 0.1870138333 - - -
17 Hb_000302_260 0.1872004118 - - hypothetical protein [Bruguiera gymnorhiza]
18 Hb_124677_060 0.1877496832 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000322_150 0.1885457652 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
20 Hb_028487_020 0.189207176 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]

Gene co-expression network

sample Hb_010727_010 Hb_010727_010 Hb_001183_010 Hb_001183_010 Hb_010727_010--Hb_001183_010 Hb_000025_340 Hb_000025_340 Hb_010727_010--Hb_000025_340 Hb_081745_010 Hb_081745_010 Hb_010727_010--Hb_081745_010 Hb_141918_010 Hb_141918_010 Hb_010727_010--Hb_141918_010 Hb_000087_050 Hb_000087_050 Hb_010727_010--Hb_000087_050 Hb_002272_080 Hb_002272_080 Hb_010727_010--Hb_002272_080 Hb_001183_010--Hb_081745_010 Hb_088753_010 Hb_088753_010 Hb_001183_010--Hb_088753_010 Hb_000402_210 Hb_000402_210 Hb_001183_010--Hb_000402_210 Hb_000451_070 Hb_000451_070 Hb_001183_010--Hb_000451_070 Hb_000016_100 Hb_000016_100 Hb_001183_010--Hb_000016_100 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_000025_340--Hb_002272_080 Hb_009838_050 Hb_009838_050 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_001817_160 Hb_001817_160 Hb_000025_340--Hb_001817_160 Hb_081745_010--Hb_141918_010 Hb_002234_190 Hb_002234_190 Hb_081745_010--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_081745_010--Hb_073395_010 Hb_164945_040 Hb_164945_040 Hb_081745_010--Hb_164945_040 Hb_010487_020 Hb_010487_020 Hb_141918_010--Hb_010487_020 Hb_003060_090 Hb_003060_090 Hb_141918_010--Hb_003060_090 Hb_000905_170 Hb_000905_170 Hb_141918_010--Hb_000905_170 Hb_001123_290 Hb_001123_290 Hb_141918_010--Hb_001123_290 Hb_000227_060 Hb_000227_060 Hb_141918_010--Hb_000227_060 Hb_000748_080 Hb_000748_080 Hb_000087_050--Hb_000748_080 Hb_006111_080 Hb_006111_080 Hb_000087_050--Hb_006111_080 Hb_145979_010 Hb_145979_010 Hb_000087_050--Hb_145979_010 Hb_111198_020 Hb_111198_020 Hb_000087_050--Hb_111198_020 Hb_023732_090 Hb_023732_090 Hb_000087_050--Hb_023732_090 Hb_003494_200 Hb_003494_200 Hb_000087_050--Hb_003494_200 Hb_002272_080--Hb_001817_160 Hb_001437_080 Hb_001437_080 Hb_002272_080--Hb_001437_080 Hb_004880_140 Hb_004880_140 Hb_002272_080--Hb_004880_140 Hb_005260_020 Hb_005260_020 Hb_002272_080--Hb_005260_020 Hb_010997_080 Hb_010997_080 Hb_002272_080--Hb_010997_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.940601 2.4733 0.396137 0.37917 0.376989 1.64136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.956059 1.39441 0.417174 1.4238 0.154963

CAGE analysis