Hb_010737_030

Information

Type -
Description -
Location Contig10737: 14941-32592
Sequence    

Annotation

kegg
ID cam:101506028
description uncharacterized LOC101506028
nr
ID CBI16442.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID F6GUD2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01430 PE=3 SV=1
Gene Ontology
ID GO:0043231
description beta glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02306: 16248-19489 , PASA_asmbl_02307: 29023-30767 , PASA_asmbl_02308: 30785-31183 , PASA_asmbl_02309: 31833-32235
cDNA
(Sanger)
(ID:Location)		 053_N05.ab1: 29023-30767

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010737_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000496_100 0.0349509995 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
3 Hb_018663_010 0.037312123 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
4 Hb_102900_010 0.0414556789 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
5 Hb_000436_110 0.0439737896 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
6 Hb_008165_010 0.0460304251 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
7 Hb_000375_200 0.0681724623 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_000751_010 0.0703412337 - - conserved hypothetical protein [Ricinus communis]
9 Hb_102129_040 0.0770048926 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
10 Hb_000051_130 0.0776854856 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_000130_400 0.0823043116 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
12 Hb_000187_020 0.0843847422 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
13 Hb_028486_020 0.084407876 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000193_170 0.0857133221 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
15 Hb_000028_010 0.086292348 - - cytochrome P450, putative [Ricinus communis]
16 Hb_006586_060 0.0872267465 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
17 Hb_059832_010 0.0875962551 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
18 Hb_003226_040 0.0951969416 - - PREDICTED: endoglucanase 17 [Populus euphratica]
19 Hb_000160_260 0.0957655796 - - nutrient reservoir, putative [Ricinus communis]
20 Hb_031862_190 0.0969687431 - - -

Gene co-expression network

sample Hb_010737_030 Hb_010737_030 Hb_000496_100 Hb_000496_100 Hb_010737_030--Hb_000496_100 Hb_018663_010 Hb_018663_010 Hb_010737_030--Hb_018663_010 Hb_102900_010 Hb_102900_010 Hb_010737_030--Hb_102900_010 Hb_000436_110 Hb_000436_110 Hb_010737_030--Hb_000436_110 Hb_008165_010 Hb_008165_010 Hb_010737_030--Hb_008165_010 Hb_000375_200 Hb_000375_200 Hb_010737_030--Hb_000375_200 Hb_028486_020 Hb_028486_020 Hb_000496_100--Hb_028486_020 Hb_000496_100--Hb_018663_010 Hb_000496_100--Hb_102900_010 Hb_000130_400 Hb_000130_400 Hb_000496_100--Hb_000130_400 Hb_000496_100--Hb_008165_010 Hb_018663_010--Hb_008165_010 Hb_018663_010--Hb_000375_200 Hb_018663_010--Hb_000436_110 Hb_018663_010--Hb_102900_010 Hb_000751_010 Hb_000751_010 Hb_102900_010--Hb_000751_010 Hb_102900_010--Hb_008165_010 Hb_102129_040 Hb_102129_040 Hb_102900_010--Hb_102129_040 Hb_102900_010--Hb_000436_110 Hb_000436_110--Hb_008165_010 Hb_000436_110--Hb_000751_010 Hb_003226_040 Hb_003226_040 Hb_000436_110--Hb_003226_040 Hb_002235_260 Hb_002235_260 Hb_008165_010--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_008165_010--Hb_004117_060 Hb_000193_170 Hb_000193_170 Hb_000375_200--Hb_000193_170 Hb_000375_200--Hb_000130_400 Hb_003464_040 Hb_003464_040 Hb_000375_200--Hb_003464_040 Hb_000187_020 Hb_000187_020 Hb_000375_200--Hb_000187_020 Hb_012368_040 Hb_012368_040 Hb_000375_200--Hb_012368_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0339896 52.9211 11.8328 0 0.00513219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00789265 8.70783

CAGE analysis