Hb_010738_010

Information

Type -
Description -
Location Contig10738: 13529-17057
Sequence    

Annotation

kegg
ID tcc:TCM_017191
description DCD domain protein isoform 1
nr
ID XP_012070379.1
description PREDICTED: B2 protein [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067LCT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02312: 12075-16940 , PASA_asmbl_02313: 12075-17071
cDNA
(Sanger)
(ID:Location)		 006_D22.ab1: 12075-14105 , 022_P06.ab1: 12159-15300 , 031_F03.ab1: 12080-15304 , 037_K09.ab1: 12089-15274 , 037_M02.ab1: 12089-15326 , 047_P16.ab1: 12075-14961 , 048_P14.ab1: 12089-14951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010738_010 0.0 - - PREDICTED: B2 protein [Jatropha curcas]
2 Hb_032202_110 0.0498061716 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_000169_130 0.0625872478 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
4 Hb_005883_010 0.0652110058 - - conserved hypothetical protein [Ricinus communis]
5 Hb_111198_010 0.0697076318 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
6 Hb_000103_100 0.0760654996 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
7 Hb_000283_130 0.0767489115 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
8 Hb_000406_240 0.0792672474 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
9 Hb_003633_070 0.0794174425 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
10 Hb_031527_020 0.0807379211 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
11 Hb_005188_060 0.084546627 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
12 Hb_000140_330 0.0872176356 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
13 Hb_007982_070 0.088112933 - - PREDICTED: protein CPR-5 [Jatropha curcas]
14 Hb_000300_360 0.0883094039 - - PREDICTED: exosome component 10 [Jatropha curcas]
15 Hb_017075_030 0.0888357296 - - helicase, putative [Ricinus communis]
16 Hb_007229_040 0.0902612709 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
17 Hb_000796_180 0.0914046179 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
18 Hb_000418_140 0.0931080321 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
19 Hb_001486_080 0.0936329166 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
20 Hb_001799_050 0.0942878251 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]

Gene co-expression network

sample Hb_010738_010 Hb_010738_010 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_005883_010 Hb_005883_010 Hb_010738_010--Hb_005883_010 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_000283_130 Hb_000283_130 Hb_010738_010--Hb_000283_130 Hb_032202_110--Hb_111198_010 Hb_000300_360 Hb_000300_360 Hb_032202_110--Hb_000300_360 Hb_011386_040 Hb_011386_040 Hb_032202_110--Hb_011386_040 Hb_007982_070 Hb_007982_070 Hb_032202_110--Hb_007982_070 Hb_000771_180 Hb_000771_180 Hb_032202_110--Hb_000771_180 Hb_004480_040 Hb_004480_040 Hb_000169_130--Hb_004480_040 Hb_003785_040 Hb_003785_040 Hb_000169_130--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_003633_070 Hb_003633_070 Hb_000169_130--Hb_003633_070 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_005883_010--Hb_000283_130 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_000103_100--Hb_003633_070 Hb_008695_110 Hb_008695_110 Hb_000103_100--Hb_008695_110 Hb_000796_180 Hb_000796_180 Hb_000103_100--Hb_000796_180 Hb_003117_020 Hb_003117_020 Hb_000103_100--Hb_003117_020 Hb_001767_140 Hb_001767_140 Hb_000103_100--Hb_001767_140 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000457_050 Hb_000457_050 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.725 16.7806 9.06995 3.90156 10.9805 12.679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.81366 6.55012 6.87434 5.88919 4.81497

CAGE analysis