Hb_010757_030

Information

Type -
Description -
Location Contig10757: 43218-45965
Sequence    

Annotation

kegg
ID rcu:RCOM_1406220
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002528404.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O65567
description Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2
trembl
ID B9SQY5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1406220 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02324: 41855-43628 , PASA_asmbl_02326: 44061-45406 , PASA_asmbl_02328: 45678-46026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010757_030 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000069_490 0.0937854723 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003878_080 0.0985013419 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
4 Hb_028707_110 0.0998577315 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
5 Hb_006846_080 0.1005265471 - - calnexin, putative [Ricinus communis]
6 Hb_003029_140 0.1058447328 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
7 Hb_016760_010 0.1069650664 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_001009_260 0.1153274623 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
9 Hb_010984_010 0.1156963075 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_005523_010 0.1158345775 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
11 Hb_003077_130 0.1179842149 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
12 Hb_000640_260 0.1183225143 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
13 Hb_002399_020 0.1186730776 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
14 Hb_005250_010 0.1210189159 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
15 Hb_000186_080 0.1215649721 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
16 Hb_002681_080 0.1217966124 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
17 Hb_001472_160 0.1221315999 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_000479_170 0.1221793215 - - chaperone clpb, putative [Ricinus communis]
19 Hb_001437_120 0.1223267944 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
20 Hb_000529_140 0.1224590243 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010757_030 Hb_010757_030 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_000069_490--Hb_003878_080 Hb_024714_080 Hb_024714_080 Hb_000069_490--Hb_024714_080 Hb_000069_490--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000069_490--Hb_003077_130 Hb_000997_140 Hb_000997_140 Hb_000069_490--Hb_000997_140 Hb_000676_200 Hb_000676_200 Hb_003878_080--Hb_000676_200 Hb_003878_080--Hb_024714_080 Hb_000934_020 Hb_000934_020 Hb_003878_080--Hb_000934_020 Hb_002282_070 Hb_002282_070 Hb_003878_080--Hb_002282_070 Hb_001437_120 Hb_001437_120 Hb_028707_110--Hb_001437_120 Hb_028707_110--Hb_000997_140 Hb_028707_110--Hb_003077_130 Hb_003929_220 Hb_003929_220 Hb_028707_110--Hb_003929_220 Hb_005914_040 Hb_005914_040 Hb_006846_080--Hb_005914_040 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_004225_040 Hb_004225_040 Hb_006846_080--Hb_004225_040 Hb_018043_020 Hb_018043_020 Hb_003029_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_003029_140--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_003029_140--Hb_008616_040 Hb_021409_190 Hb_021409_190 Hb_003029_140--Hb_021409_190 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_010984_010 Hb_010984_010 Hb_016760_010--Hb_010984_010 Hb_001009_260 Hb_001009_260 Hb_016760_010--Hb_001009_260 Hb_003142_010 Hb_003142_010 Hb_016760_010--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_016760_010--Hb_001080_070 Hb_010344_030 Hb_010344_030 Hb_016760_010--Hb_010344_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13076 4.70772 5.33427 5.25672 3.8284 3.63016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59507 1.1171 3.3562 4.2638 20.5321

CAGE analysis