Hb_010775_010

Information

Type -
Description -
Location Contig10775: 30806-41128
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13450g
description hypothetical protein
nr
ID XP_012082266.1
description PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
swissprot
ID Q8BT14
description CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2
trembl
ID A0A067JYM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16455 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna binding family isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02341: 30839-36277 , PASA_asmbl_02342: 30960-36277 , PASA_asmbl_02343: 31968-32241 , PASA_asmbl_02345: 36982-41107 , PASA_asmbl_02346: 36448-37387 , PASA_asmbl_02347: 36448-37679
cDNA
(Sanger)
(ID:Location)		 025_H19.ab1: 30839-36126

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010775_010 0.0 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
2 Hb_005885_030 0.0531254426 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_013358_060 0.0748264168 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
4 Hb_006794_020 0.0748848158 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
5 Hb_001133_090 0.0762837303 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
6 Hb_001488_210 0.0781760823 - - PREDICTED: protein RIK [Jatropha curcas]
7 Hb_002686_410 0.0799296645 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
8 Hb_000418_050 0.0832252023 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
9 Hb_000866_080 0.0851201496 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
10 Hb_000270_700 0.0851509753 - - PREDICTED: protease Do-like 9 [Populus euphratica]
11 Hb_000030_140 0.0854439749 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
12 Hb_000260_760 0.0907221401 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
13 Hb_000665_260 0.0913757585 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
14 Hb_004800_130 0.0920370824 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
15 Hb_001205_180 0.0936997406 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
16 Hb_002248_120 0.0943470864 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_001911_010 0.0947481367 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
18 Hb_000796_120 0.0955267323 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
19 Hb_159295_010 0.0974637331 - - hypothetical protein RCOM_1520720 [Ricinus communis]
20 Hb_009178_010 0.0983475531 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]

Gene co-expression network

sample Hb_010775_010 Hb_010775_010 Hb_005885_030 Hb_005885_030 Hb_010775_010--Hb_005885_030 Hb_013358_060 Hb_013358_060 Hb_010775_010--Hb_013358_060 Hb_006794_020 Hb_006794_020 Hb_010775_010--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_010775_010--Hb_001133_090 Hb_001488_210 Hb_001488_210 Hb_010775_010--Hb_001488_210 Hb_002686_410 Hb_002686_410 Hb_010775_010--Hb_002686_410 Hb_005885_030--Hb_002686_410 Hb_000270_700 Hb_000270_700 Hb_005885_030--Hb_000270_700 Hb_002248_120 Hb_002248_120 Hb_005885_030--Hb_002248_120 Hb_005885_030--Hb_006794_020 Hb_005885_030--Hb_001133_090 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_143629_020 Hb_143629_020 Hb_006794_020--Hb_143629_020 Hb_006794_020--Hb_000331_100 Hb_006794_020--Hb_000270_700 Hb_000421_110 Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_000418_050 Hb_000418_050 Hb_001133_090--Hb_000418_050 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_001133_090--Hb_000270_700 Hb_002553_010 Hb_002553_010 Hb_001488_210--Hb_002553_010 Hb_000300_250 Hb_000300_250 Hb_001488_210--Hb_000300_250 Hb_001488_210--Hb_002686_410 Hb_003216_060 Hb_003216_060 Hb_001488_210--Hb_003216_060 Hb_000453_230 Hb_000453_230 Hb_001488_210--Hb_000453_230 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.31986 37.8133 28.7507 16.4936 11.9246 7.97928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.54204 4.22276 4.19757 18.6861 22.8106

CAGE analysis