Hb_010775_030

Information

Type -
Description -
Location Contig10775: 49803-52418
Sequence    

Annotation

kegg
ID vvi:100255110
description 60S ribosomal protein L4
nr
ID XP_002274975.1
description PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
swissprot
ID Q9SF40
description 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1
trembl
ID F6HQV3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g03200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02352: 49919-52341
cDNA
(Sanger)
(ID:Location)		 030_B23.ab1: 51596-52339 , 037_E23.ab1: 51521-52337 , 041_A01.ab1: 51633-52177 , 049_C20.ab1: 51724-52319 , 051_G16.ab1: 51602-52339

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010775_030 0.0 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
2 Hb_001357_310 0.0447889194 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
3 Hb_002110_160 0.0617950424 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
4 Hb_002014_010 0.0695024777 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_006588_060 0.0716199621 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
6 Hb_000086_420 0.0758815995 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
7 Hb_171900_090 0.0769774377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000176_020 0.0813239313 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
9 Hb_004994_240 0.0813470024 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
10 Hb_000513_090 0.081624547 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
11 Hb_003687_120 0.0818427945 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_002232_480 0.0821430511 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
13 Hb_000402_150 0.082970828 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
14 Hb_004109_320 0.0835738651 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
15 Hb_002909_040 0.0836595443 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
16 Hb_001366_090 0.0847068322 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
17 Hb_000089_210 0.0864101058 - - unknown [Medicago truncatula]
18 Hb_001300_010 0.0870259183 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000359_040 0.0878433265 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012092_050 0.0878966585 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010775_030 Hb_010775_030 Hb_001357_310 Hb_001357_310 Hb_010775_030--Hb_001357_310 Hb_002110_160 Hb_002110_160 Hb_010775_030--Hb_002110_160 Hb_002014_010 Hb_002014_010 Hb_010775_030--Hb_002014_010 Hb_006588_060 Hb_006588_060 Hb_010775_030--Hb_006588_060 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_007257_060 Hb_007257_060 Hb_001357_310--Hb_007257_060 Hb_001357_310--Hb_002014_010 Hb_012092_050 Hb_012092_050 Hb_001357_310--Hb_012092_050 Hb_000402_150 Hb_000402_150 Hb_001357_310--Hb_000402_150 Hb_001357_310--Hb_006588_060 Hb_000282_090 Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_002110_160--Hb_004870_050 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_007248_030 Hb_007248_030 Hb_002014_010--Hb_007248_030 Hb_004109_320 Hb_004109_320 Hb_002014_010--Hb_004109_320 Hb_002014_010--Hb_171900_090 Hb_000702_090 Hb_000702_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_000008_420 Hb_000008_420 Hb_006588_060--Hb_000008_420 Hb_006588_060--Hb_012092_050 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_000327_140 Hb_000327_140 Hb_000086_420--Hb_000327_140 Hb_000029_060 Hb_000029_060 Hb_000086_420--Hb_000029_060 Hb_012239_020 Hb_012239_020 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.2483 156.021 197.003 121.232 74.2925 66.5374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.1603 119.889 75.0486 126.585 73.8971

CAGE analysis