Hb_010789_020

Information

Type -
Description -
Location Contig10789: 38799-40703
Sequence    

Annotation

kegg
ID rcu:RCOM_1272580
description ubiquitin-conjugating enzyme e2S, putative (EC:6.3.2.19)
nr
ID XP_002523681.1
description ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
swissprot
ID Q9FF66
description Ubiquitin-conjugating enzyme E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1
trembl
ID B9SCG2
description Ubiquitin-conjugating enzyme e2S, putative OS=Ricinus communis GN=RCOM_1272580 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02358: 37978-40835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010789_020 0.0 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
2 Hb_164945_010 0.1122789512 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
3 Hb_000580_100 0.118579523 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
4 Hb_011671_480 0.1247087963 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010381_010 0.1334919278 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_039021_010 0.1335341778 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
7 Hb_000622_200 0.1344934278 - - aldose 1-epimerase, putative [Ricinus communis]
8 Hb_002615_070 0.1361432476 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
9 Hb_000438_090 0.1372662862 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
10 Hb_124373_010 0.138681611 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
11 Hb_089140_120 0.1405236354 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
12 Hb_171718_020 0.143554273 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
13 Hb_004079_130 0.143796698 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
14 Hb_000836_300 0.1459229932 - - caax prenyl protease ste24, putative [Ricinus communis]
15 Hb_001482_050 0.1459356131 - - COR413-PM2, putative [Ricinus communis]
16 Hb_118507_010 0.1466018553 - - hypothetical protein VITISV_019292 [Vitis vinifera]
17 Hb_002311_380 0.1485239584 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
18 Hb_001829_040 0.1490436679 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
19 Hb_005535_080 0.1494659331 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
20 Hb_002869_050 0.1504490526 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010789_020 Hb_010789_020 Hb_164945_010 Hb_164945_010 Hb_010789_020--Hb_164945_010 Hb_000580_100 Hb_000580_100 Hb_010789_020--Hb_000580_100 Hb_011671_480 Hb_011671_480 Hb_010789_020--Hb_011671_480 Hb_010381_010 Hb_010381_010 Hb_010789_020--Hb_010381_010 Hb_039021_010 Hb_039021_010 Hb_010789_020--Hb_039021_010 Hb_000622_200 Hb_000622_200 Hb_010789_020--Hb_000622_200 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_007163_060 Hb_007163_060 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010 Hb_000580_100--Hb_039021_010 Hb_005245_120 Hb_005245_120 Hb_000580_100--Hb_005245_120 Hb_000580_100--Hb_000622_200 Hb_000913_040 Hb_000913_040 Hb_000580_100--Hb_000913_040 Hb_004117_190 Hb_004117_190 Hb_000580_100--Hb_004117_190 Hb_004079_130 Hb_004079_130 Hb_000580_100--Hb_004079_130 Hb_001829_040 Hb_001829_040 Hb_011671_480--Hb_001829_040 Hb_000538_240 Hb_000538_240 Hb_011671_480--Hb_000538_240 Hb_001911_040 Hb_001911_040 Hb_011671_480--Hb_001911_040 Hb_000260_720 Hb_000260_720 Hb_011671_480--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_161568_010 Hb_161568_010 Hb_010381_010--Hb_161568_010 Hb_003119_090 Hb_003119_090 Hb_010381_010--Hb_003119_090 Hb_010381_010--Hb_000836_300 Hb_007786_030 Hb_007786_030 Hb_010381_010--Hb_007786_030 Hb_004096_160 Hb_004096_160 Hb_010381_010--Hb_004096_160 Hb_010381_010--Hb_000622_200 Hb_005144_210 Hb_005144_210 Hb_039021_010--Hb_005144_210 Hb_039021_010--Hb_000836_300 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310 Hb_001482_050 Hb_001482_050 Hb_000622_200--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_000622_200--Hb_007850_030 Hb_016734_080 Hb_016734_080 Hb_000622_200--Hb_016734_080 Hb_000622_200--Hb_039021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.34467 10.7992 19.1959 24.4077 5.98274 8.28267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.46437 7.62852 3.71353 8.09526 1.64875

CAGE analysis